Variant report

Variant	rs55953486
Chromosome Location	chr1:185549906-185549907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55646109	0.87[AFR][1000 genomes]
rs55785813	1.00[AFR][1000 genomes]
rs55868516	1.00[AFR][1000 genomes]
rs57402553	1.00[AFR][1000 genomes]
rs60005347	1.00[AFR][1000 genomes]
rs60245030	0.86[AFR][1000 genomes]
rs74132952	1.00[AFR][1000 genomes]
rs74132956	1.00[AFR][1000 genomes]
rs74132958	1.00[AFR][1000 genomes]
rs74132959	1.00[AFR][1000 genomes]
rs74132961	1.00[AFR][1000 genomes]
rs74133203	1.00[AFR][1000 genomes]
rs74133206	1.00[AFR][1000 genomes]
rs74133208	1.00[AFR][1000 genomes]
rs74133214	1.00[AFR][1000 genomes]
rs74133218	1.00[AFR][1000 genomes]
rs74133220	1.00[AFR][1000 genomes]
rs74133221	1.00[AFR][1000 genomes]
rs74133222	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185540600-185551200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:185547400-185557200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:185549800-185551200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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