Variant report

Variant	rs55646109
Chromosome Location	chr1:185603445-185603446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55785813	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55868516	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55953486	0.87[AFR][1000 genomes]
rs57402553	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58169917	1.00[AMR][1000 genomes]
rs58478654	1.00[AMR][1000 genomes]
rs60005347	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60245030	1.00[AMR][1000 genomes]
rs74132952	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132958	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132959	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132961	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133203	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133206	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133208	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133210	1.00[AMR][1000 genomes]
rs74133214	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133218	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133220	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133221	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133222	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133237	1.00[AMR][1000 genomes]
rs74135006	1.00[AMR][1000 genomes]
rs74135007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3350575	chr1:185580344-185614213	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185601200-185603800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:185601600-185603600	Enhancers	Placenta	Placenta
3	chr1:185602600-185604400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:185602600-185605200	Weak transcription	NHEK	skin
5	chr1:185602800-185607400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:185603000-185603600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:185603000-185605200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:185603400-185604200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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