Variant report
| Variant | rs74133237 |
|---|---|
| Chromosome Location | chr1:185655553-185655554 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000116679 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs55646109 | 1.00[AMR][1000 genomes] |
| rs55785813 | 1.00[AMR][1000 genomes] |
| rs55868516 | 1.00[AMR][1000 genomes] |
| rs57402553 | 1.00[AMR][1000 genomes] |
| rs58478654 | 1.00[AMR][1000 genomes] |
| rs60005347 | 1.00[AMR][1000 genomes] |
| rs60245030 | 1.00[AMR][1000 genomes] |
| rs74132952 | 1.00[AMR][1000 genomes] |
| rs74132956 | 1.00[AMR][1000 genomes] |
| rs74132958 | 1.00[AMR][1000 genomes] |
| rs74132959 | 1.00[AMR][1000 genomes] |
| rs74132961 | 1.00[AMR][1000 genomes] |
| rs74133203 | 1.00[AMR][1000 genomes] |
| rs74133206 | 1.00[AMR][1000 genomes] |
| rs74133208 | 1.00[AMR][1000 genomes] |
| rs74133210 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74133214 | 1.00[AMR][1000 genomes] |
| rs74133218 | 1.00[AMR][1000 genomes] |
| rs74133220 | 1.00[AMR][1000 genomes] |
| rs74133221 | 1.00[AMR][1000 genomes] |
| rs74133222 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv548398 | chr1:185136458-186003094 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 69 gene(s) | inside rSNPs | diseases |
| 2 | nsv947341 | chr1:185651878-185664812 | Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:185655000-185655600 | Weak transcription | Fetal Brain Male | brain |
