The 2.0 version of rSNPBase

Variant report

Variant rs57402553
Chromosome Location chr1:185532781-185532782
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:185521000-185533800 Weak transcription Placenta Placenta
2 chr1:185525400-185536000 Weak transcription Stomach Mucosa stomach
3 chr1:185526400-185533800 Weak transcription Osteobl bone
4 chr1:185528000-185536000 Weak transcription Fetal Kidney kidney
5 chr1:185528600-185533000 Enhancers Primary T cells from cord blood blood
6 chr1:185528600-185539800 Enhancers Primary T helper 17 cells PMA-I stimulated --
7 chr1:185528800-185532800 Enhancers Primary T helper cells PMA-I stimulated --
8 chr1:185529200-185535400 Weak transcription Small Intestine intestine
9 chr1:185529400-185533200 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:185529400-185533800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr1:185529400-185534000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:185529400-185534000 Weak transcription Fetal Heart heart
13 chr1:185529400-185543000 Weak transcription Pancreas Pancrea
14 chr1:185529600-185535800 Weak transcription Fetal Intestine Large intestine
15 chr1:185530400-185535000 Weak transcription Primary B cells from cord blood blood
16 chr1:185530400-185535400 Weak transcription Duodenum Mucosa Duodenum
17 chr1:185530400-185536000 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr1:185530800-185533000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:185530800-185533400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr1:185530800-185535800 Weak transcription Monocytes-CD14+_RO01746 blood
21 chr1:185530800-185536600 Weak transcription Left Ventricle heart
22 chr1:185530800-185544000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr1:185531000-185534600 Weak transcription Primary B cells from peripheral blood blood
24 chr1:185531000-185535200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:185531000-185535800 Weak transcription Primary monocytes fromperipheralblood blood
26 chr1:185531200-185532800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
27 chr1:185531200-185533000 Weak transcription Primary T cells fromperipheralblood blood
28 chr1:185531200-185533000 Weak transcription HMEC breast
29 chr1:185531200-185534400 Weak transcription Primary hematopoietic stem cells blood
30 chr1:185531200-185536000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr1:185531400-185533000 Weak transcription NHEK skin
32 chr1:185531400-185534400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:185531400-185534600 Weak transcription Primary neutrophils fromperipheralblood blood
34 chr1:185531400-185534600 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:185531600-185534600 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr1:185531600-185534600 Weak transcription Fetal Thymus thymus
37 chr1:185531800-185533200 Weak transcription Placenta Amnion Placenta Amnion
38 chr1:185531800-185533400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr1:185531800-185533400 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr1:185531800-185534400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:185531800-185534800 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr1:185531800-185540400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:185532000-185533800 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:185532000-185534400 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr1:185532200-185536200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:185532400-185532800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:185532400-185533600 Weak transcription Primary T helper cells fromperipheralblood blood
48 chr1:185532400-185534000 Weak transcription Thymus Thymus
49 chr1:185532400-185534400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015