Variant report

Variant	rs55941363
Chromosome Location	chr5:144947862-144947863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11953220	0.83[AFR][1000 genomes]
rs11953354	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11955724	0.87[AMR][1000 genomes]
rs11955785	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11956761	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11958782	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1560684	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17103532	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55726225	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56361925	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57017606	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58634621	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60762736	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6865168	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73309629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309647	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311510	0.87[AMR][1000 genomes]
rs73311530	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311575	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311576	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313727	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313734	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73792629	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73792642	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs883102	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144924000-144949000	Weak transcription	Aorta	Aorta
2	chr5:144947600-144948000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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