Variant report

Variant	rs55726225
Chromosome Location	chr5:144990017-144990018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11953220	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11953354	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955157	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11955456	0.85[AFR][1000 genomes]
rs11955724	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956386	0.85[AFR][1000 genomes]
rs11956761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958334	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11958782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11960156	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1560684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103607	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17103617	0.87[AMR][1000 genomes]
rs17103619	0.87[AMR][1000 genomes]
rs55647611	0.87[AMR][1000 genomes]
rs55941363	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56064088	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56124935	0.87[AMR][1000 genomes]
rs56361925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57017606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58004021	0.84[AFR][1000 genomes]
rs58324774	0.87[AMR][1000 genomes]
rs58634621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58759146	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59638267	0.87[AMR][1000 genomes]
rs60762736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61340437	0.84[AFR][1000 genomes]
rs61697400	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6865168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302003	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73302014	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73302042	0.87[AMR][1000 genomes]
rs73302047	0.87[AMR][1000 genomes]
rs73302067	0.87[AMR][1000 genomes]
rs73309629	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73309647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311510	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313727	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313767	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73792629	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73792642	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794413	0.87[AMR][1000 genomes]
rs883102	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144989800-144991400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links