Variant report

Variant	rs58004021
Chromosome Location	chr5:145032276-145032277
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11953220	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11953354	0.81[AFR][1000 genomes]
rs11955157	0.89[AMR][1000 genomes]
rs11955456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955785	0.84[AFR][1000 genomes]
rs11956386	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956761	0.84[AFR][1000 genomes]
rs11958334	0.89[AMR][1000 genomes]
rs11958782	0.84[AFR][1000 genomes]
rs11960156	0.89[AMR][1000 genomes]
rs1560684	0.84[AFR][1000 genomes]
rs17103532	0.84[AFR][1000 genomes]
rs17103607	0.89[AMR][1000 genomes]
rs17103617	0.89[AMR][1000 genomes]
rs17103619	0.89[AMR][1000 genomes]
rs55647611	0.89[AMR][1000 genomes]
rs55726225	0.84[AFR][1000 genomes]
rs56064088	0.89[AMR][1000 genomes]
rs56124935	0.89[AMR][1000 genomes]
rs56361925	0.84[AFR][1000 genomes]
rs58324774	0.89[AMR][1000 genomes]
rs58634621	0.84[AFR][1000 genomes]
rs58759146	0.89[AMR][1000 genomes]
rs59638267	0.89[AMR][1000 genomes]
rs60762736	0.84[AFR][1000 genomes]
rs61697400	0.89[AMR][1000 genomes]
rs6865168	0.84[AFR][1000 genomes]
rs73302003	0.89[AMR][1000 genomes]
rs73302014	0.89[AMR][1000 genomes]
rs73302042	0.89[AMR][1000 genomes]
rs73302047	0.89[AMR][1000 genomes]
rs73302067	0.89[AMR][1000 genomes]
rs73309647	0.84[AFR][1000 genomes]
rs73311530	0.84[AFR][1000 genomes]
rs73311576	0.84[AFR][1000 genomes]
rs73313727	0.81[AFR][1000 genomes]
rs73313734	0.84[AFR][1000 genomes]
rs73313767	0.89[AMR][1000 genomes]
rs73794413	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275206	chr5:145016621-145036932	Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026800-145041000	Weak transcription	Ovary	ovary
2	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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