Variant report

Variant	rs73313767
Chromosome Location	chr5:145026667-145026668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11953354	0.87[AMR][1000 genomes]
rs11955157	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955456	0.89[AMR][1000 genomes]
rs11955724	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11955785	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11956386	0.89[AMR][1000 genomes]
rs11956761	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11958334	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958782	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11960156	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1560684	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17103532	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17103607	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103617	1.00[AMR][1000 genomes]
rs17103619	1.00[AMR][1000 genomes]
rs55647611	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55726225	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56063484	0.89[AMR][1000 genomes]
rs56064088	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56124935	1.00[AMR][1000 genomes]
rs56361925	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56808087	0.89[AMR][1000 genomes]
rs57017606	0.87[AMR][1000 genomes]
rs58004021	0.89[AMR][1000 genomes]
rs58324774	1.00[AMR][1000 genomes]
rs58634621	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58759146	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59638267	1.00[AMR][1000 genomes]
rs60762736	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61340437	0.91[AFR][1000 genomes]
rs61697400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865168	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73302003	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302014	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302042	1.00[AMR][1000 genomes]
rs73302047	1.00[AMR][1000 genomes]
rs73302067	1.00[AMR][1000 genomes]
rs73309647	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311510	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311530	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311575	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311576	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313727	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313734	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313770	0.84[AFR][1000 genomes]
rs73792629	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73792642	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73794413	1.00[AMR][1000 genomes]
rs883102	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275206	chr5:145016621-145036932	Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026400-145027000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr5:145026400-145027200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:145026400-145027400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:145026400-145027600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:145026400-145027600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:145026400-145027600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:145026600-145026800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:145026600-145026800	ZNF genes & repeats	Ovary	ovary
9	chr5:145026600-145027400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:145026600-145027600	Strong transcription	Fetal Intestine Small	intestine
11	chr5:145026600-145027800	Enhancers	HUES64 Cell Line	embryonic stem cell

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