Variant report

Variant	rs56064088
Chromosome Location	chr5:145046684-145046685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11953354	0.87[AMR][1000 genomes]
rs11955157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955456	0.89[AMR][1000 genomes]
rs11955724	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11955785	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11956386	0.89[AMR][1000 genomes]
rs11956761	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11958334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958782	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11960156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1560684	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17103532	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17103607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103617	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103619	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55647611	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55726225	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56063484	0.89[AMR][1000 genomes]
rs56124935	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56361925	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56808087	0.89[AMR][1000 genomes]
rs57017606	0.87[AMR][1000 genomes]
rs58004021	0.89[AMR][1000 genomes]
rs58324774	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58634621	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58759146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59638267	1.00[AMR][1000 genomes]
rs60762736	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61340437	0.85[AFR][1000 genomes]
rs61697400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865168	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73302003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302042	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302047	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302067	1.00[AMR][1000 genomes]
rs73309647	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311510	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311530	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311575	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311576	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313727	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313734	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313767	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73792629	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73792642	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73794413	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs883102	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
2	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145042400-145053200	Weak transcription	Fetal Lung	lung
4	chr5:145045600-145049400	Enhancers	Fetal Intestine Small	intestine
5	chr5:145045800-145048000	Enhancers	Fetal Intestine Large	intestine
6	chr5:145045800-145048000	Enhancers	Stomach Mucosa	stomach
7	chr5:145046400-145048200	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links