Variant report

Variant	rs58324774
Chromosome Location	chr5:145070917-145070918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11953354	0.87[AMR][1000 genomes]
rs11955157	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955456	0.89[AMR][1000 genomes]
rs11955724	0.87[AMR][1000 genomes]
rs11955785	0.87[AMR][1000 genomes]
rs11956386	0.89[AMR][1000 genomes]
rs11956761	0.87[AMR][1000 genomes]
rs11958334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958782	0.87[AMR][1000 genomes]
rs11960156	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1560684	0.87[AMR][1000 genomes]
rs17103532	0.87[AMR][1000 genomes]
rs17103607	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55647611	1.00[AMR][1000 genomes]
rs55726225	0.87[AMR][1000 genomes]
rs56063484	0.89[AMR][1000 genomes]
rs56064088	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56124935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56361925	0.87[AMR][1000 genomes]
rs56808087	0.89[AMR][1000 genomes]
rs57017606	0.87[AMR][1000 genomes]
rs58004021	0.89[AMR][1000 genomes]
rs58634621	0.87[AMR][1000 genomes]
rs58759146	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59638267	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60762736	0.87[AMR][1000 genomes]
rs61697400	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865168	0.87[AMR][1000 genomes]
rs73302003	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302014	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302049	0.86[AFR][1000 genomes]
rs73302067	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309647	0.87[AMR][1000 genomes]
rs73311510	0.87[AMR][1000 genomes]
rs73311530	0.87[AMR][1000 genomes]
rs73311575	0.87[AMR][1000 genomes]
rs73311576	0.87[AMR][1000 genomes]
rs73313727	0.87[AMR][1000 genomes]
rs73313734	0.87[AMR][1000 genomes]
rs73313767	1.00[AMR][1000 genomes]
rs73792629	0.87[AMR][1000 genomes]
rs73792642	0.87[AMR][1000 genomes]
rs73794413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs883102	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
2	chr5:145060800-145089600	Weak transcription	Gastric	stomach
3	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
4	chr5:145062400-145071800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:145069400-145076800	Weak transcription	Brain Angular Gyrus	brain

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