Variant report

Variant	rs73311575
Chromosome Location	chr5:145000293-145000294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11953220	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11953354	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955157	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11955724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955785	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956761	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958334	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11958782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11960156	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1560684	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103607	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17103617	0.87[AMR][1000 genomes]
rs17103619	0.87[AMR][1000 genomes]
rs55647611	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55726225	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941363	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56064088	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56124935	0.87[AMR][1000 genomes]
rs56361925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57017606	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58324774	0.87[AMR][1000 genomes]
rs58634621	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58759146	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59638267	0.87[AMR][1000 genomes]
rs60762736	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61340437	0.90[AFR][1000 genomes]
rs61697400	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6865168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302003	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73302014	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73302042	0.87[AMR][1000 genomes]
rs73302047	0.87[AMR][1000 genomes]
rs73302067	0.87[AMR][1000 genomes]
rs73309629	0.87[AMR][1000 genomes]
rs73309647	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311510	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311576	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313734	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313767	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73792629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73792642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794413	0.87[AMR][1000 genomes]
rs883102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144997400-145003200	Weak transcription	Ovary	ovary
2	chr5:144998600-145003200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:144998800-145000400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:144999000-145000400	Enhancers	NHLF	lung

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