Variant report

Variant	rs11953220
Chromosome Location	chr5:145014386-145014387
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11953354	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11955456	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11955724	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11955785	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11956386	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11956761	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11958782	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1560684	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17103532	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55726225	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55941363	0.83[AFR][1000 genomes]
rs56361925	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57017606	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58004021	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58634621	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60762736	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6865168	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73309629	0.82[AFR][1000 genomes]
rs73309647	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311510	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311530	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311575	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73311576	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313727	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73313734	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73792629	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73792642	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs883102	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145012400-145014600	Enhancers	Stomach Mucosa	stomach
2	chr5:145013800-145014800	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links