Variant report

Variant	rs55950088
Chromosome Location	chr6:147761035-147761036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1761945	1.00[ASN][1000 genomes]
rs1999655	1.00[EUR][1000 genomes]
rs476397	1.00[ASN][1000 genomes]
rs504326	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55932190	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600555	1.00[ASN][1000 genomes]
rs635855	1.00[ASN][1000 genomes]
rs645207	1.00[ASN][1000 genomes]
rs664260	1.00[ASN][1000 genomes]
rs73592042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73592051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv525703	chr6:147759534-147767235	Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147755800-147763400	Weak transcription	Ovary	ovary
2	chr6:147757400-147762800	Weak transcription	Fetal Stomach	stomach
3	chr6:147758800-147761200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr6:147760400-147761400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr6:147760600-147761200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
6	chr6:147760600-147767200	Weak transcription	Brain Germinal Matrix	brain
7	chr6:147760800-147761200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
8	chr6:147760800-147761600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr6:147761000-147761200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr6:147761000-147761200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr6:147761000-147761400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr6:147761000-147761600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr6:147761000-147762400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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