Variant report

Variant	rs600555
Chromosome Location	chr6:147768294-147768295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1761945	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476397	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504326	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932190	1.00[ASN][1000 genomes]
rs55950088	1.00[ASN][1000 genomes]
rs635855	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645207	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664260	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73592042	1.00[ASN][1000 genomes]
rs73592051	1.00[ASN][1000 genomes]
rs73787190	1.00[ASN][1000 genomes]
rs7749519	1.00[ASN][1000 genomes]
rs9485187	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147766800-147768800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr6:147767000-147768600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr6:147767000-147768800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:147767200-147769000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr6:147767200-147769200	Enhancers	Brain Germinal Matrix	brain
6	chr6:147767600-147768600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:147767800-147768600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:147767800-147769600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:147768000-147768600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:147768200-147769200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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