Variant report

Variant	rs7749519
Chromosome Location	chr6:147770693-147770694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1761945	1.00[ASN][1000 genomes]
rs1999655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs476397	1.00[ASN][1000 genomes]
rs504326	1.00[ASN][1000 genomes]
rs55932190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55950088	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600555	1.00[ASN][1000 genomes]
rs635855	1.00[ASN][1000 genomes]
rs645207	1.00[ASN][1000 genomes]
rs664260	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73592042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73592051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147768600-147771000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:147768800-147771000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:147768800-147771000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:147769200-147771000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:147769200-147773400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:147769400-147771000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:147769400-147771000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:147769600-147771000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:147769800-147770800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:147770000-147772200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:147770000-147773400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:147770200-147771000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:147770200-147773200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:147770400-147770800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:147770400-147771200	Enhancers	K562	blood
16	chr6:147770400-147773200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:147770400-147773400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:147770600-147773400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:147770600-147773600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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