Variant report

Variant	rs73787190
Chromosome Location	chr6:147744470-147744471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1761945	1.00[ASN][1000 genomes]
rs1999655	1.00[EUR][1000 genomes]
rs476397	1.00[ASN][1000 genomes]
rs504326	1.00[ASN][1000 genomes]
rs55932190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55950088	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600555	1.00[ASN][1000 genomes]
rs635855	1.00[ASN][1000 genomes]
rs645207	1.00[ASN][1000 genomes]
rs664260	1.00[ASN][1000 genomes]
rs73592042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73592051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147743600-147744600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:147743800-147744800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:147743800-147745200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:147744200-147744600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:147744400-147744600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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