Variant report

Variant	rs55959108
Chromosome Location	chr3:85137753-85137754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10490896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865606	1.00[ASN][1000 genomes]
rs11914646	0.86[EUR][1000 genomes]
rs12487214	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12487780	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12487784	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12489229	1.00[ASN][1000 genomes]
rs12491943	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12492245	1.00[ASN][1000 genomes]
rs12494948	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12495761	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12496274	1.00[ASN][1000 genomes]
rs12497304	0.89[ASN][1000 genomes]
rs17022387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200465	0.93[ASN][1000 genomes]
rs34992129	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57795594	0.95[AFR][1000 genomes]
rs58443333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58554319	1.00[ASN][1000 genomes]
rs59147667	1.00[ASN][1000 genomes]
rs59322652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60399717	1.00[ASN][1000 genomes]
rs6549013	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770622	1.00[ASN][1000 genomes]
rs6773806	1.00[ASN][1000 genomes]
rs6774581	1.00[ASN][1000 genomes]
rs6800224	1.00[ASN][1000 genomes]
rs72903389	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905237	1.00[ASN][1000 genomes]
rs72905254	1.00[ASN][1000 genomes]
rs72907123	1.00[ASN][1000 genomes]
rs72907139	1.00[ASN][1000 genomes]
rs73843272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843278	0.95[AFR][1000 genomes]
rs73843282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73843290	1.00[ASN][1000 genomes]
rs7611119	1.00[ASN][1000 genomes]
rs7643802	0.92[ASN][1000 genomes]
rs7648199	1.00[ASN][1000 genomes]
rs9821283	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85132000-85140400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:85132000-85141600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:85136200-85137800	Enhancers	Brain Hippocampus Middle	brain
4	chr3:85136200-85137800	Enhancers	Brain Substantia Nigra	brain
5	chr3:85136200-85138200	Enhancers	Brain Angular Gyrus	brain
6	chr3:85136400-85137800	Enhancers	Brain Anterior Caudate	brain
7	chr3:85137000-85137800	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:85137200-85139800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:85137400-85138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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