Variant report

Variant	rs9821283
Chromosome Location	chr3:85308911-85308912
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1005690	0.82[ASN][1000 genomes]
rs10490896	0.81[ASN][1000 genomes]
rs10490897	0.81[ASN][1000 genomes]
rs10865606	0.81[ASN][1000 genomes]
rs12486810	1.00[CEU][hapmap]
rs12487214	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12487446	1.00[JPT][hapmap]
rs12487780	0.81[ASN][1000 genomes]
rs12487784	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12489229	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12491352	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12491707	1.00[JPT][hapmap]
rs12491943	0.81[ASN][1000 genomes]
rs12492245	0.81[ASN][1000 genomes]
rs12494948	0.81[ASN][1000 genomes]
rs12495761	0.81[ASN][1000 genomes]
rs12496274	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12497304	0.92[ASN][1000 genomes]
rs12497411	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12498133	1.00[JPT][hapmap]
rs13324607	1.00[YRI][hapmap]
rs1368747	0.82[CHD][hapmap]
rs17022387	0.81[ASN][1000 genomes]
rs1985715	0.82[ASN][1000 genomes]
rs2200463	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2200465	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs34992129	0.81[ASN][1000 genomes]
rs55959108	0.81[ASN][1000 genomes]
rs57202752	0.82[ASN][1000 genomes]
rs58443333	0.81[ASN][1000 genomes]
rs58554319	0.81[ASN][1000 genomes]
rs59147667	0.81[ASN][1000 genomes]
rs59322652	0.81[ASN][1000 genomes]
rs60117233	0.82[ASN][1000 genomes]
rs60399717	0.81[ASN][1000 genomes]
rs60794345	0.82[ASN][1000 genomes]
rs61288113	0.82[ASN][1000 genomes]
rs6549013	0.81[ASN][1000 genomes]
rs6770622	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6773806	1.00[CEU][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6774581	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6800224	0.81[ASN][1000 genomes]
rs72903204	0.82[ASN][1000 genomes]
rs72903206	0.82[ASN][1000 genomes]
rs72903210	0.82[ASN][1000 genomes]
rs72903211	0.82[ASN][1000 genomes]
rs72903214	0.82[ASN][1000 genomes]
rs72903217	0.82[ASN][1000 genomes]
rs72903224	0.82[ASN][1000 genomes]
rs72903248	0.82[ASN][1000 genomes]
rs72903250	0.82[ASN][1000 genomes]
rs72903253	0.82[ASN][1000 genomes]
rs72903389	0.81[ASN][1000 genomes]
rs72905237	0.81[ASN][1000 genomes]
rs72905254	0.81[ASN][1000 genomes]
rs72907123	0.81[ASN][1000 genomes]
rs72907139	0.81[ASN][1000 genomes]
rs72921320	0.82[ASN][1000 genomes]
rs72921324	0.82[ASN][1000 genomes]
rs72921330	0.82[ASN][1000 genomes]
rs72921331	0.82[ASN][1000 genomes]
rs72921337	0.82[ASN][1000 genomes]
rs72921344	0.82[ASN][1000 genomes]
rs72921353	0.82[ASN][1000 genomes]
rs72921358	0.82[ASN][1000 genomes]
rs72921359	0.82[ASN][1000 genomes]
rs72921360	0.82[ASN][1000 genomes]
rs72921361	0.82[ASN][1000 genomes]
rs72921365	0.82[ASN][1000 genomes]
rs72921368	0.82[ASN][1000 genomes]
rs72921370	0.82[ASN][1000 genomes]
rs73843272	0.81[ASN][1000 genomes]
rs73843277	0.81[ASN][1000 genomes]
rs73843290	0.81[ASN][1000 genomes]
rs7611119	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7616336	0.82[ASN][1000 genomes]
rs7643802	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7648199	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9810866	1.00[YRI][hapmap]
rs9824840	0.82[CHD][hapmap]
rs9833972	0.82[CHD][hapmap]
rs9835616	1.00[YRI][hapmap]
rs9855678	1.00[YRI][hapmap]
rs9856305	1.00[YRI][hapmap]
rs9870282	1.00[YRI][hapmap]
rs9873752	0.82[CHD][hapmap]
rs9877705	1.00[YRI][hapmap]
rs9990095	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877096	chr3:85163167-85366517	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1001124	chr3:85167047-85309046	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv877098	chr3:85177173-85361645	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv470716	chr3:85194054-85316648	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv590903	chr3:85200742-85316648	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv999255	chr3:85222822-85323285	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv536617	chr3:85222822-85323285	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv877100	chr3:85234199-85336559	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1006718	chr3:85243599-85323285	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1012601	chr3:85246185-85426996	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv536618	chr3:85246185-85426996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85307200-85309000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:85307400-85309200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:85307600-85309200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:85308200-85309200	Enhancers	Brain Germinal Matrix	brain
5	chr3:85308400-85309600	Weak transcription	Brain Angular Gyrus	brain
6	chr3:85308400-85309800	Weak transcription	Brain Anterior Caudate	brain
7	chr3:85308400-85310000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:85308600-85310000	Enhancers	Brain Substantia Nigra	brain
9	chr3:85308800-85309000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:85308800-85309000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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