Variant report

Variant	rs10490897
Chromosome Location	chr3:85101573-85101574
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10433523	0.83[YRI][hapmap]
rs10490896	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865606	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11914646	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12486810	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs12487214	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12487780	1.00[ASN][1000 genomes]
rs12487784	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1248853	1.00[MEX][hapmap]
rs12489229	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12491943	1.00[ASN][1000 genomes]
rs12492245	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12494948	1.00[ASN][1000 genomes]
rs12495761	1.00[ASN][1000 genomes]
rs12496274	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12497304	0.89[ASN][1000 genomes]
rs17022359	0.81[YRI][hapmap]
rs17022387	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200463	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200465	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34992129	1.00[ASN][1000 genomes]
rs55959108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58443333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58554319	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59147667	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59322652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60399717	1.00[ASN][1000 genomes]
rs6549013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770622	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6773806	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6774581	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs6800224	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72903389	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905237	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905254	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907123	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72907139	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73843272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843282	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73843290	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7611119	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7643802	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7648199	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9821283	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85096200-85103200	Weak transcription	Fetal Brain Male	brain
2	chr3:85100000-85101600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:85100400-85101600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:85100600-85101600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:85100800-85101600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:85100800-85103400	Weak transcription	Fetal Brain Female	brain
7	chr3:85101000-85101600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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