Variant report

Variant	rs12497304
Chromosome Location	chr3:85202062-85202063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10490896	0.89[ASN][1000 genomes]
rs10490897	0.89[ASN][1000 genomes]
rs10865606	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12487214	0.82[ASN][1000 genomes]
rs12487780	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12487784	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12489229	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12491943	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12492245	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12494948	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12495761	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12496274	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17022387	0.89[ASN][1000 genomes]
rs2200463	0.89[ASN][1000 genomes]
rs2200465	0.82[ASN][1000 genomes]
rs34992129	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55959108	0.89[ASN][1000 genomes]
rs58443333	0.89[ASN][1000 genomes]
rs58554319	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59147667	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59322652	0.89[ASN][1000 genomes]
rs60399717	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6549013	0.89[ASN][1000 genomes]
rs6770622	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6773806	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6774581	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6800224	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72903389	0.89[ASN][1000 genomes]
rs72905237	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72905254	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72907123	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72907139	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73843272	0.89[ASN][1000 genomes]
rs73843277	0.89[ASN][1000 genomes]
rs73843282	0.82[ASN][1000 genomes]
rs73843290	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7611119	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643802	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7648199	0.89[ASN][1000 genomes]
rs9821283	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590898	chr3:85158733-85243777	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877095	chr3:85163167-85290434	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv877096	chr3:85163167-85366517	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1001124	chr3:85167047-85309046	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv590900	chr3:85177049-85265011	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv877097	chr3:85177173-85290434	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv877098	chr3:85177173-85361645	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv460748	chr3:85194054-85302473	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv460749	chr3:85194054-85302473	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv590901	chr3:85194054-85302473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv470716	chr3:85194054-85316648	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv877099	chr3:85200179-85304062	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv590902	chr3:85200742-85302473	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv590903	chr3:85200742-85316648	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85197400-85209600	Weak transcription	Stomach Mucosa	stomach
2	chr3:85199400-85213400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:85201400-85202600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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