Variant report

Variant	rs55960139
Chromosome Location	chr13:95288608-95288609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95281545..95283175-chr13:95286843..95288996,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs61965607	0.89[AMR][1000 genomes]
rs7330899	0.85[AMR][1000 genomes]
rs7997429	0.87[AMR][1000 genomes]
rs8001569	0.85[AMR][1000 genomes]
rs9301978	0.87[AMR][1000 genomes]
rs9524552	0.87[AMR][1000 genomes]
rs9524570	0.89[AMR][1000 genomes]
rs9590036	0.87[AMR][1000 genomes]
rs9590043	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95254800-95288800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:95264200-95299600	Weak transcription	Psoas Muscle	Psoas
3	chr13:95264600-95289200	Weak transcription	Esophagus	oesophagus
4	chr13:95264600-95289600	Weak transcription	Fetal Kidney	kidney
5	chr13:95265600-95293400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:95275800-95288800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:95276600-95292800	Weak transcription	Colon Smooth Muscle	Colon
8	chr13:95276600-95293600	Weak transcription	HSMMtube	muscle
9	chr13:95276800-95288800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr13:95276800-95289000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:95276800-95292400	Weak transcription	NHEK	skin
12	chr13:95276800-95292800	Weak transcription	NHLF	lung
13	chr13:95276800-95294000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:95277000-95289200	Weak transcription	Brain Hippocampus Middle	brain
15	chr13:95277200-95291200	Weak transcription	Primary B cells from cord blood	blood
16	chr13:95277200-95293000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr13:95277400-95289800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:95277400-95293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr13:95277400-95293800	Weak transcription	Ovary	ovary
20	chr13:95277800-95293200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:95278800-95289200	Weak transcription	Fetal Intestine Large	intestine
22	chr13:95279600-95289200	Weak transcription	Brain Anterior Caudate	brain
23	chr13:95279800-95289000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr13:95280600-95293000	Weak transcription	HUVEC	blood vessel
25	chr13:95280600-95293600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr13:95282200-95289000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr13:95282400-95292800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:95282800-95293400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr13:95283000-95289200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr13:95283000-95292800	Weak transcription	NH-A	brain
31	chr13:95283200-95292400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr13:95283400-95289000	Weak transcription	Brain Angular Gyrus	brain
33	chr13:95283400-95289200	Weak transcription	Dnd41	blood
34	chr13:95283400-95289400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr13:95283400-95293200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:95283400-95293600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr13:95283400-95293600	Weak transcription	Fetal Muscle Leg	muscle
38	chr13:95283400-95293800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr13:95283600-95289200	Weak transcription	Left Ventricle	heart
40	chr13:95283600-95289400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:95283600-95289400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr13:95283600-95292800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:95283600-95293200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:95283800-95289400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr13:95284400-95293200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr13:95285000-95293000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr13:95285200-95292800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr13:95285600-95293600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr13:95287000-95291200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr13:95287600-95289200	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links