Variant report

Variant	rs9524570
Chromosome Location	chr13:95281618-95281619
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95279700..95282385-chr13:95284753..95286898,2	K562	blood:
2	chr13:95281545..95283175-chr13:95286843..95288996,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2226077	0.84[CEU][hapmap]
rs55960139	0.89[AMR][1000 genomes]
rs61965607	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6492724	0.84[CEU][hapmap]
rs7330899	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7336371	0.82[AMR][1000 genomes]
rs7997429	0.89[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8001569	0.93[CEU][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9301978	0.89[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9524552	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9590036	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9590043	1.00[CEU][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95254600-95284000	Weak transcription	Spleen	Spleen
2	chr13:95254800-95288800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:95255200-95282200	Weak transcription	Brain Angular Gyrus	brain
4	chr13:95255400-95288600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr13:95255600-95281800	Weak transcription	Fetal Brain Male	brain
6	chr13:95255600-95282600	Weak transcription	Fetal Heart	heart
7	chr13:95255800-95284000	Weak transcription	K562	blood
8	chr13:95255800-95285000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:95259800-95282000	Weak transcription	Brain Germinal Matrix	brain
10	chr13:95260000-95285800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:95264000-95284000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr13:95264200-95299600	Weak transcription	Psoas Muscle	Psoas
13	chr13:95264600-95282400	Weak transcription	Pancreas	Pancrea
14	chr13:95264600-95289200	Weak transcription	Esophagus	oesophagus
15	chr13:95264600-95289600	Weak transcription	Fetal Kidney	kidney
16	chr13:95264800-95284600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr13:95265400-95286800	Weak transcription	A549	lung
18	chr13:95265600-95293400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:95268800-95283800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr13:95270000-95283400	Strong transcription	Dnd41	blood
21	chr13:95270400-95283400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr13:95270800-95283200	Strong transcription	Osteobl	bone
23	chr13:95271000-95283000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:95271000-95283600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr13:95271400-95282200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr13:95271600-95281800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr13:95272400-95282800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr13:95272600-95283400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr13:95274000-95284400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr13:95275200-95282600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:95275200-95284000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr13:95275400-95282400	Strong transcription	HMEC	breast
33	chr13:95275400-95283000	Strong transcription	NH-A	brain
34	chr13:95275400-95283200	Strong transcription	Fetal Thymus	thymus
35	chr13:95275400-95283400	Strong transcription	Adipose Nuclei	Adipose
36	chr13:95275800-95288800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr13:95276600-95292800	Weak transcription	Colon Smooth Muscle	Colon
38	chr13:95276600-95293600	Weak transcription	HSMMtube	muscle
39	chr13:95276800-95284400	Weak transcription	Fetal Lung	lung
40	chr13:95276800-95284800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr13:95276800-95285000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr13:95276800-95286000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr13:95276800-95286200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr13:95276800-95287000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr13:95276800-95287400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr13:95276800-95288600	Weak transcription	Primary T cells from cord blood	blood
47	chr13:95276800-95288800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr13:95276800-95289000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr13:95276800-95292400	Weak transcription	NHEK	skin
50	chr13:95276800-95292800	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links