Variant report

Variant	rs9524552
Chromosome Location	chr13:95249907-95249908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95246267..95250128-chr13:95251933..95256020,6	MCF-7	breast:
2	chr13:95245952..95249992-chr13:95252491..95255739,5	K562	blood:

Variant related genes	Relation type
ENSG00000152749	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16949940	0.83[EUR][1000 genomes]
rs55960139	0.87[AMR][1000 genomes]
rs61965607	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7322453	0.81[EUR][1000 genomes]
rs7330899	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7336371	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7997429	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8001569	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9301978	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516436	0.83[EUR][1000 genomes]
rs9524537	0.83[AFR][1000 genomes]
rs9524570	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9590036	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9590039	0.83[EUR][1000 genomes]
rs9590043	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95248800-95253200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:95248800-95253200	Weak transcription	Primary T cells from cord blood	blood
3	chr13:95248800-95253600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:95248800-95253600	Weak transcription	HUVEC	blood vessel
5	chr13:95249000-95250200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:95249000-95250200	Weak transcription	NHLF	lung
7	chr13:95249000-95252000	Weak transcription	Fetal Intestine Large	intestine
8	chr13:95249000-95252000	Weak transcription	Stomach Mucosa	stomach
9	chr13:95249000-95252200	Weak transcription	Fetal Intestine Small	intestine
10	chr13:95249000-95252800	Weak transcription	GM12878-XiMat	blood
11	chr13:95249000-95253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr13:95249000-95253200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:95249000-95253200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:95249000-95253200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr13:95249000-95253200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr13:95249000-95253200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr13:95249000-95253200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr13:95249000-95253200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr13:95249000-95253200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr13:95249000-95253200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:95249000-95253200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:95249000-95253200	Weak transcription	Brain Anterior Caudate	brain
23	chr13:95249000-95253200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr13:95249000-95253200	Weak transcription	Brain Substantia Nigra	brain
25	chr13:95249000-95253200	Weak transcription	Colon Smooth Muscle	Colon
26	chr13:95249000-95253200	Weak transcription	Fetal Brain Male	brain
27	chr13:95249000-95253200	Weak transcription	Fetal Heart	heart
28	chr13:95249000-95253200	Weak transcription	Fetal Kidney	kidney
29	chr13:95249000-95253200	Weak transcription	Fetal Stomach	stomach
30	chr13:95249000-95253200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr13:95249000-95253200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr13:95249000-95253200	Weak transcription	Osteobl	bone
33	chr13:95249000-95253600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr13:95249000-95253600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr13:95249000-95253600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr13:95249000-95253600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr13:95249000-95253600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr13:95249000-95253600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr13:95249000-95253600	Weak transcription	Adipose Nuclei	Adipose
40	chr13:95249000-95253600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr13:95249000-95253600	Weak transcription	Right Atrium	heart
42	chr13:95249000-95253600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr13:95249000-95253800	Weak transcription	Spleen	Spleen
44	chr13:95249200-95251800	Weak transcription	Liver	Liver
45	chr13:95249200-95252000	Weak transcription	HepG2	liver
46	chr13:95249200-95252400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr13:95249200-95252800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr13:95249200-95253000	Weak transcription	Fetal Muscle Leg	muscle
49	chr13:95249200-95253200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr13:95249200-95253200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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