Variant report

Variant	rs61965607
Chromosome Location	chr13:95268140-95268141
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16949940	0.80[EUR][1000 genomes]
rs55960139	0.89[AMR][1000 genomes]
rs7330899	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7336371	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7997429	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8001569	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9301978	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9516436	0.80[EUR][1000 genomes]
rs9524552	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9524570	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9590036	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9590039	0.80[EUR][1000 genomes]
rs9590043	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95254600-95276600	Weak transcription	Small Intestine	intestine
2	chr13:95254600-95284000	Weak transcription	Spleen	Spleen
3	chr13:95254800-95268200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr13:95254800-95272000	Weak transcription	Lung	lung
5	chr13:95254800-95275400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr13:95254800-95275600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:95254800-95288800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:95255000-95275400	Weak transcription	Aorta	Aorta
9	chr13:95255000-95275600	Weak transcription	Right Ventricle	heart
10	chr13:95255000-95276200	Weak transcription	HSMMtube	muscle
11	chr13:95255000-95281000	Weak transcription	Colonic Mucosa	Colon
12	chr13:95255200-95272200	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:95255200-95276200	Weak transcription	Fetal Brain Female	brain
14	chr13:95255200-95278200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:95255200-95282200	Weak transcription	Brain Angular Gyrus	brain
16	chr13:95255400-95288600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr13:95255600-95281800	Weak transcription	Fetal Brain Male	brain
18	chr13:95255600-95282600	Weak transcription	Fetal Heart	heart
19	chr13:95255800-95278000	Weak transcription	Hela-S3	cervix
20	chr13:95255800-95284000	Weak transcription	K562	blood
21	chr13:95255800-95285000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr13:95256600-95272000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr13:95257400-95268600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:95257400-95269000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr13:95257600-95268600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:95257600-95268600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:95259000-95275400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr13:95259600-95275400	Weak transcription	Primary B cells from cord blood	blood
29	chr13:95259600-95275400	Weak transcription	Brain Hippocampus Middle	brain
30	chr13:95259800-95268600	Strong transcription	Dnd41	blood
31	chr13:95259800-95269000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr13:95259800-95275800	Weak transcription	Gastric	stomach
33	chr13:95259800-95276000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr13:95259800-95282000	Weak transcription	Brain Germinal Matrix	brain
35	chr13:95260000-95270400	Weak transcription	HMEC	breast
36	chr13:95260000-95285800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr13:95260600-95269000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr13:95261200-95272000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr13:95261800-95275400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr13:95262200-95278200	Weak transcription	Brain Substantia Nigra	brain
41	chr13:95262400-95268800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:95262600-95268600	Strong transcription	NHDF-Ad	bronchial
43	chr13:95262600-95271000	Weak transcription	Brain Anterior Caudate	brain
44	chr13:95262800-95268800	Strong transcription	Osteobl	bone
45	chr13:95263400-95271400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr13:95263600-95276200	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr13:95264000-95268200	Weak transcription	Thymus	Thymus
48	chr13:95264000-95275400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr13:95264000-95275400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr13:95264000-95284000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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