Variant report

Variant	rs55965226
Chromosome Location	chr8:10137930-10137931
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11249985	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11249990	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11774051	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11777018	0.83[EUR][1000 genomes]
rs11778030	0.82[EUR][1000 genomes]
rs11778901	0.83[EUR][1000 genomes]
rs11781529	0.81[EUR][1000 genomes]
rs11782293	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11783091	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11783281	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11785954	0.83[EUR][1000 genomes]
rs13257313	0.89[AMR][1000 genomes]
rs13258691	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13264133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13269741	0.89[AMR][1000 genomes]
rs13272537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17695316	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2004677	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2004679	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34514972	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34917779	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35287467	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35524676	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4288377	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4570161	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4840478	0.91[AMR][1000 genomes]
rs4840479	0.83[EUR][1000 genomes]
rs4841308	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4841315	0.91[AMR][1000 genomes]
rs4841325	0.82[EUR][1000 genomes]
rs4841326	0.83[EUR][1000 genomes]
rs56064712	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6601436	0.89[AMR][1000 genomes]
rs6601438	0.89[AMR][1000 genomes]
rs71516564	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs723609	0.89[AMR][1000 genomes]
rs7817142	0.85[AMR][1000 genomes]
rs7838059	0.89[AMR][1000 genomes]
rs9650648	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9650649	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10123000-10138400	Weak transcription	Spleen	Spleen
2	chr8:10128400-10138200	Weak transcription	Fetal Brain Female	brain
3	chr8:10130400-10144200	Weak transcription	Liver	Liver
4	chr8:10133800-10139000	Weak transcription	Fetal Brain Male	brain
5	chr8:10134200-10147600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:10136200-10138200	Weak transcription	Brain Germinal Matrix	brain
7	chr8:10136600-10142800	Weak transcription	Pancreas	Pancrea
8	chr8:10136800-10138400	Enhancers	NHEK	skin
9	chr8:10137000-10138200	Enhancers	HMEC	breast
10	chr8:10137000-10138200	Enhancers	NH-A	brain
11	chr8:10137000-10138800	Enhancers	A549	lung
12	chr8:10137400-10140000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:10137600-10141800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:10137800-10138800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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