Variant report

Variant	rs7838059
Chromosome Location	chr8:10178810-10178811
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10178281..10180046-chr8:10185118..10187450,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11249985	0.89[AMR][1000 genomes]
rs11249990	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11774051	0.88[AMR][1000 genomes]
rs11782293	0.91[AMR][1000 genomes]
rs11783091	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11783281	0.89[AMR][1000 genomes]
rs13257313	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13264133	0.89[AMR][1000 genomes]
rs13269741	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13272537	0.89[AMR][1000 genomes]
rs17695316	0.86[AMR][1000 genomes]
rs2004677	0.88[AMR][1000 genomes]
rs2004679	0.83[AMR][1000 genomes]
rs34514972	0.81[AMR][1000 genomes]
rs34917779	0.90[AMR][1000 genomes]
rs35287467	0.82[AMR][1000 genomes]
rs4840478	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4841308	0.90[AMR][1000 genomes]
rs4841315	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4841316	1.00[YRI][hapmap]
rs55965226	0.89[AMR][1000 genomes]
rs6601434	0.83[YRI][hapmap]
rs6601436	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6601437	0.83[YRI][hapmap]
rs6601438	0.90[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71516564	0.88[AMR][1000 genomes]
rs723609	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7817142	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9650648	0.82[AMR][1000 genomes]
rs9650649	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv610264	chr8:10158428-10181176	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10168400-10188600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:10169000-10183200	Weak transcription	Brain Angular Gyrus	brain
3	chr8:10169000-10183600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:10173200-10182200	Weak transcription	Fetal Brain Male	brain
5	chr8:10175600-10183200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr8:10176600-10191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:10176800-10179600	Weak transcription	Colonic Mucosa	Colon
8	chr8:10177200-10179800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:10177400-10179000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr8:10177400-10179200	ZNF genes & repeats	Lung	lung
11	chr8:10177800-10179400	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr8:10177800-10179600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr8:10177800-10179600	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr8:10177800-10179600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:10178000-10179400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr8:10178000-10179600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:10178000-10179600	ZNF genes & repeats	Fetal Brain Female	brain
18	chr8:10178200-10179400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
19	chr8:10178200-10179400	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr8:10178200-10179400	ZNF genes & repeats	Brain Substantia Nigra	brain
21	chr8:10178200-10179400	ZNF genes & repeats	Fetal Stomach	stomach
22	chr8:10178200-10179400	ZNF genes & repeats	Left Ventricle	heart
23	chr8:10178200-10179600	ZNF genes & repeats	Brain Anterior Caudate	brain
24	chr8:10178200-10180200	ZNF genes & repeats	Brain Germinal Matrix	brain
25	chr8:10178400-10179400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
26	chr8:10178400-10179600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
27	chr8:10178600-10190400	Weak transcription	Primary B cells from cord blood	blood
28	chr8:10178800-10179000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:10178800-10179000	Strong transcription	Stomach Smooth Muscle	stomach
30	chr8:10178800-10179200	ZNF genes & repeats	Colon Smooth Muscle	Colon
31	chr8:10178800-10179200	ZNF genes & repeats	Esophagus	oesophagus
32	chr8:10178800-10179200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr8:10178800-10179200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr8:10178800-10179400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:10178800-10179400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:10178800-10179400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
37	chr8:10178800-10179400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr8:10178800-10179400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:10178800-10179400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
40	chr8:10178800-10179400	ZNF genes & repeats	Adipose Nuclei	Adipose
41	chr8:10178800-10179400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:10178800-10179400	ZNF genes & repeats	Fetal Intestine Large	intestine
43	chr8:10178800-10179400	ZNF genes & repeats	Gastric	stomach
44	chr8:10178800-10179400	ZNF genes & repeats	Ovary	ovary
45	chr8:10178800-10179400	ZNF genes & repeats	Pancreas	Pancrea
46	chr8:10178800-10179400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
47	chr8:10178800-10179400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
48	chr8:10178800-10179400	ZNF genes & repeats	Spleen	Spleen
49	chr8:10178800-10179400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
50	chr8:10178800-10179600	ZNF genes & repeats	Liver	Liver

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