Variant report

Variant	rs55988558
Chromosome Location	chr14:71033104-71033105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10134765	0.95[ASN][1000 genomes]
rs10135054	0.80[ASN][1000 genomes]
rs10144849	0.90[ASN][1000 genomes]
rs10145606	0.95[ASN][1000 genomes]
rs2233136	0.83[AMR][1000 genomes]
rs55638679	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55788982	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830682	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831916	0.90[ASN][1000 genomes]
rs55844620	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55861611	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55881091	0.95[ASN][1000 genomes]
rs56118324	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56284928	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56322329	0.90[ASN][1000 genomes]
rs56389452	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56405439	0.90[ASN][1000 genomes]
rs59480415	0.90[ASN][1000 genomes]
rs66883325	0.90[ASN][1000 genomes]
rs66915556	0.90[ASN][1000 genomes]
rs67358716	0.90[ASN][1000 genomes]
rs67988556	0.80[ASN][1000 genomes]
rs7154970	0.90[ASN][1000 genomes]
rs7160103	0.90[ASN][1000 genomes]
rs72719730	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719731	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719734	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719735	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719738	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719739	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719741	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719744	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72719746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72719757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72719758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72719764	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72719773	0.90[ASN][1000 genomes]
rs72719777	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72719785	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72719791	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8004872	0.95[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71004200-71034600	Weak transcription	Brain Substantia Nigra	brain
2	chr14:71022800-71047000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:71023000-71045800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:71023200-71034000	Weak transcription	NHEK	skin
5	chr14:71023200-71050400	Weak transcription	Gastric	stomach
6	chr14:71025400-71047600	Weak transcription	NH-A	brain
7	chr14:71026400-71047000	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:71026800-71035200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:71027400-71047200	Weak transcription	NHLF	lung
10	chr14:71027800-71034200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:71028200-71033400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr14:71028200-71034000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:71028400-71033400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr14:71028400-71034200	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr14:71028400-71035000	Strong transcription	Adipose Nuclei	Adipose
16	chr14:71028600-71047200	Weak transcription	Fetal Heart	heart
17	chr14:71028600-71047200	Weak transcription	Hela-S3	cervix
18	chr14:71028800-71035000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:71028800-71048200	Weak transcription	HMEC	breast
20	chr14:71029000-71033200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
21	chr14:71029000-71033400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:71029000-71033600	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:71029000-71034200	Strong transcription	Placenta	Placenta
24	chr14:71029000-71034400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr14:71029000-71035000	Strong transcription	Liver	Liver
26	chr14:71029000-71035200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:71029000-71035400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr14:71029000-71047200	Weak transcription	HUVEC	blood vessel
29	chr14:71029000-71056400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr14:71029000-71058800	Weak transcription	Esophagus	oesophagus
31	chr14:71029000-71066000	Weak transcription	Small Intestine	intestine
32	chr14:71029200-71033200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr14:71029200-71033400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:71029200-71033800	Weak transcription	A549	lung
35	chr14:71029200-71047600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr14:71029400-71034400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:71029400-71047400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr14:71029400-71049200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr14:71029600-71033800	Weak transcription	Fetal Intestine Small	intestine
40	chr14:71029600-71034200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:71029600-71034600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr14:71029600-71048600	Weak transcription	Colonic Mucosa	Colon
43	chr14:71029800-71033800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:71029800-71035200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:71029800-71035200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr14:71029800-71046800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:71030000-71034800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr14:71030200-71047000	Weak transcription	HSMM	muscle
49	chr14:71030600-71047200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr14:71030800-71034000	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links