Variant report

Variant	rs7154970
Chromosome Location	chr14:71064577-71064578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:71064543-71064780	A549	lung:	n/a	chr14:71064645-71064656
2	STAT3	chr14:71064508-71064776	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr14:71064553-71064781	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr14:71064512-71064765	MCF10A-Er-Src	breast:	n/a	n/a
5	CEBPB	chr14:71064572-71064738	HepG2	liver:	n/a	chr14:71064645-71064656
6	FOS	chr14:71064556-71064710	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr14:71064493-71064797	Hela-S3	cervix:	n/a	chr14:71064645-71064656
8	FOS	chr14:71064509-71064795	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71057525..71060066-chr14:71062663..71064760,2	K562	blood:

Variant related genes	Relation type
MED6	TF binding region
ENSG00000133997	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10129662	0.81[AFR][1000 genomes]
rs10134765	0.85[ASN][1000 genomes]
rs10135054	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10142880	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10144849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145399	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10145606	0.85[ASN][1000 genomes]
rs10149881	0.81[AFR][1000 genomes]
rs2233136	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs55638679	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55788982	0.90[ASN][1000 genomes]
rs55830682	0.90[ASN][1000 genomes]
rs55831916	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55844620	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55861611	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55881091	0.85[ASN][1000 genomes]
rs55988558	0.90[ASN][1000 genomes]
rs56118324	0.90[ASN][1000 genomes]
rs56284928	0.90[ASN][1000 genomes]
rs56322329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56389452	0.90[ASN][1000 genomes]
rs56405439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59480415	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66883325	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66915556	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67358716	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67988556	0.90[ASN][1000 genomes]
rs7150080	1.00[YRI][hapmap]
rs7153652	0.86[YRI][hapmap]
rs7160103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719730	0.90[ASN][1000 genomes]
rs72719731	0.90[ASN][1000 genomes]
rs72719734	0.90[ASN][1000 genomes]
rs72719735	0.90[ASN][1000 genomes]
rs72719738	0.90[ASN][1000 genomes]
rs72719739	0.90[ASN][1000 genomes]
rs72719741	0.90[ASN][1000 genomes]
rs72719743	0.90[ASN][1000 genomes]
rs72719744	0.90[ASN][1000 genomes]
rs72719745	0.85[ASN][1000 genomes]
rs72719746	0.90[ASN][1000 genomes]
rs72719747	0.90[ASN][1000 genomes]
rs72719748	0.90[ASN][1000 genomes]
rs72719750	0.90[ASN][1000 genomes]
rs72719751	0.90[ASN][1000 genomes]
rs72719754	1.00[ASN][1000 genomes]
rs72719757	1.00[ASN][1000 genomes]
rs72719758	1.00[ASN][1000 genomes]
rs72719764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719773	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719785	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72719791	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73282201	0.81[AFR][1000 genomes]
rs73283954	0.82[AFR][1000 genomes]
rs73286047	0.85[AFR][1000 genomes]
rs73286048	0.85[AFR][1000 genomes]
rs8004872	0.85[ASN][1000 genomes]
rs8009390	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9323543	0.84[AFR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71029000-71066000	Weak transcription	Small Intestine	intestine
2	chr14:71042000-71066600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:71045400-71064600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr14:71045600-71064600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:71045600-71064600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr14:71046400-71064800	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:71046800-71064600	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:71047200-71064600	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr14:71047400-71064600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:71047400-71064800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr14:71047400-71066000	Weak transcription	Fetal Heart	heart
12	chr14:71048000-71066000	Weak transcription	K562	blood
13	chr14:71048400-71064600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:71049600-71066000	Weak transcription	Stomach Mucosa	stomach
15	chr14:71051400-71066800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:71058200-71065800	Weak transcription	NHDF-Ad	bronchial
17	chr14:71061600-71066600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:71062200-71065800	Weak transcription	HUVEC	blood vessel
19	chr14:71062200-71065800	Weak transcription	Osteobl	bone
20	chr14:71062200-71066000	Weak transcription	Fetal Brain Male	brain
21	chr14:71062400-71066000	Weak transcription	HSMMtube	muscle
22	chr14:71062400-71066200	Weak transcription	Right Ventricle	heart
23	chr14:71062600-71065600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:71062600-71065800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr14:71062600-71066800	Weak transcription	Pancreas	Pancrea
26	chr14:71062800-71066200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:71063000-71065800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:71063000-71065800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr14:71063000-71065800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr14:71063000-71066000	Weak transcription	NHLF	lung
31	chr14:71063200-71065400	Weak transcription	Hela-S3	cervix
32	chr14:71063200-71065600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:71063200-71065600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:71063200-71065600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:71063200-71065600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr14:71063200-71065600	Weak transcription	Brain Angular Gyrus	brain
37	chr14:71063200-71065600	Weak transcription	Brain Germinal Matrix	brain
38	chr14:71063200-71065600	Weak transcription	NHEK	skin
39	chr14:71063200-71065800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:71063200-71065800	Weak transcription	Fetal Intestine Large	intestine
41	chr14:71063200-71065800	Weak transcription	Ovary	ovary
42	chr14:71063200-71065800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr14:71063200-71065800	Weak transcription	A549	lung
44	chr14:71063200-71066000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:71063200-71066000	Weak transcription	Gastric	stomach
46	chr14:71063200-71066000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr14:71063200-71066000	Weak transcription	Psoas Muscle	Psoas
48	chr14:71063200-71066000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr14:71063200-71066000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr14:71063200-71066000	Weak transcription	Spleen	Spleen

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