Variant report

Variant	rs55993167
Chromosome Location	chr1:185684300-185684301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185683580..185685751-chr1:185685821..185688370,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11579889	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11583092	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11583867	0.84[ASN][1000 genomes]
rs11584252	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11587852	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589543	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12078015	0.84[ASN][1000 genomes]
rs12079064	0.84[ASN][1000 genomes]
rs12083564	0.84[ASN][1000 genomes]
rs12085167	0.84[ASN][1000 genomes]
rs1321668	0.84[ASN][1000 genomes]
rs1322359	0.84[ASN][1000 genomes]
rs1322364	0.84[ASN][1000 genomes]
rs1358871	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1484134	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1484135	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552281	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16824390	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16824396	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17445778	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17446906	0.84[ASN][1000 genomes]
rs2004324	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170859	0.84[ASN][1000 genomes]
rs34923020	0.92[EUR][1000 genomes]
rs35425624	0.84[ASN][1000 genomes]
rs41519044	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4515745	0.84[ASN][1000 genomes]
rs4593772	0.84[ASN][1000 genomes]
rs4596837	0.84[ASN][1000 genomes]
rs56031313	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56238699	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57146145	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58708412	0.93[EUR][1000 genomes]
rs59197925	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59253277	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59702468	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60074235	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60376365	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829644	0.88[EUR][1000 genomes]
rs61829860	0.84[ASN][1000 genomes]
rs61831462	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831464	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61831470	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831480	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831482	0.84[EUR][1000 genomes]
rs61831483	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831484	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61831485	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831486	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831502	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831503	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831504	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61831505	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831519	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61831521	0.84[EUR][1000 genomes]
rs61831528	0.84[ASN][1000 genomes]
rs61831532	0.84[ASN][1000 genomes]
rs6656530	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6668606	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6668607	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6692602	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72727759	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7414598	0.84[ASN][1000 genomes]
rs7534755	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7538168	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7547022	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7554903	0.93[EUR][1000 genomes]
rs900775	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9286857	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936723	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992760	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994970	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185683000-185702600	Weak transcription	Aorta	Aorta

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