Variant report

Variant	rs7554903
Chromosome Location	chr1:185692281-185692282
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185692201..185694286-chr1:185695758..185698283,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11579889	0.86[EUR][1000 genomes]
rs11583092	0.86[EUR][1000 genomes]
rs11584252	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11587852	0.90[EUR][1000 genomes]
rs11589543	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1358871	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1484134	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1484135	0.92[EUR][1000 genomes]
rs1552281	0.86[EUR][1000 genomes]
rs16824390	0.84[EUR][1000 genomes]
rs16824396	0.85[EUR][1000 genomes]
rs17445778	0.86[EUR][1000 genomes]
rs2004324	0.95[EUR][1000 genomes]
rs34923020	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41519044	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55993167	0.93[EUR][1000 genomes]
rs56031313	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56238699	0.95[EUR][1000 genomes]
rs57146145	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58708412	0.99[EUR][1000 genomes]
rs59197925	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59253277	0.92[EUR][1000 genomes]
rs59702468	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60074235	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60376365	0.95[EUR][1000 genomes]
rs61829644	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61831462	0.92[EUR][1000 genomes]
rs61831464	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61831470	0.81[EUR][1000 genomes]
rs61831480	0.93[EUR][1000 genomes]
rs61831482	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61831483	0.86[EUR][1000 genomes]
rs61831484	0.81[EUR][1000 genomes]
rs61831485	0.83[EUR][1000 genomes]
rs61831486	0.86[EUR][1000 genomes]
rs61831502	0.86[EUR][1000 genomes]
rs61831503	0.86[EUR][1000 genomes]
rs61831504	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61831505	0.86[EUR][1000 genomes]
rs61831519	0.88[EUR][1000 genomes]
rs61831521	0.83[EUR][1000 genomes]
rs6656530	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6668606	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6668607	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6692602	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72727759	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7534755	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7538168	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7547022	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs900775	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9286857	0.92[EUR][1000 genomes]
rs936723	0.95[EUR][1000 genomes]
rs992760	0.95[EUR][1000 genomes]
rs994970	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185683000-185702600	Weak transcription	Aorta	Aorta
2	chr1:185688800-185703000	Weak transcription	NH-A	brain
3	chr1:185689800-185702800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:185690400-185702800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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