Variant report

Variant	rs1358871
Chromosome Location	chr1:185664227-185664228
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10489707	1.00[JPT][hapmap]
rs11579889	0.82[EUR][1000 genomes]
rs11583092	0.82[EUR][1000 genomes]
rs11583867	1.00[CHB][hapmap]
rs11584252	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11589543	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079064	1.00[CHB][hapmap]
rs12087032	1.00[CHB][hapmap]
rs1322359	1.00[CHB][hapmap]
rs1407430	1.00[CHB][hapmap]
rs1407431	1.00[CHB][hapmap]
rs1484134	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1484135	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1552281	0.82[EUR][1000 genomes]
rs16824390	0.83[EUR][1000 genomes]
rs16824396	0.82[EUR][1000 genomes]
rs17445778	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs17446906	1.00[CHB][hapmap]
rs17448216	1.00[CHB][hapmap]
rs17448230	1.00[CHB][hapmap]
rs1951517	1.00[CHB][hapmap]
rs2004324	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2170859	1.00[CHB][hapmap]
rs34923020	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35425624	1.00[CHB][hapmap]
rs41357745	1.00[CHB][hapmap]
rs41519044	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55993167	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56031313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56238699	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57146145	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58708412	0.92[EUR][1000 genomes]
rs59197925	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59253277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59702468	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60074235	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60376365	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61829644	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61831462	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61831464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831470	0.84[EUR][1000 genomes]
rs61831480	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61831482	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61831483	0.82[EUR][1000 genomes]
rs61831486	0.82[EUR][1000 genomes]
rs61831502	0.82[EUR][1000 genomes]
rs61831503	0.82[EUR][1000 genomes]
rs61831504	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61831505	0.82[EUR][1000 genomes]
rs61831519	0.85[EUR][1000 genomes]
rs6656530	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692602	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727759	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538168	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547022	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554903	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs900775	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9286857	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs936723	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9628625	1.00[CHB][hapmap]
rs992760	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs994970	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv947341	chr1:185651878-185664812	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185663400-185664400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:185663600-185664400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:185663600-185665000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:185663600-185668800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:185663600-185669000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:185663800-185664400	Enhancers	Primary B cells from cord blood	blood
7	chr1:185663800-185664400	Enhancers	Primary T cells from cord blood	blood
8	chr1:185663800-185664400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:185663800-185664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:185663800-185664400	Enhancers	Fetal Intestine Small	intestine
11	chr1:185663800-185664600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:185663800-185664600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:185663800-185667200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:185663800-185668600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:185663800-185668800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:185664000-185664400	Enhancers	Duodenum Mucosa	Duodenum

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