Variant report

Variant	rs61829644
Chromosome Location	chr1:185656001-185656002
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:185647865..185651448-chr1:185655327..185657400,3	MCF-7	breast:
2	chr1:185647796..185649318-chr1:185655826..185657961,2	K562	blood:
3	chr1:185655546..185657231-chr1:185661378..185664178,2	MCF-7	breast:
4	chr1:185284926..185286754-chr1:185654263..185656171,2	MCF-7	breast:
5	chr1:185655642..185657375-chr1:185671456..185674455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116679	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11584252	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11587852	0.87[EUR][1000 genomes]
rs11589543	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1358871	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1484134	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1484135	0.88[EUR][1000 genomes]
rs2004324	0.86[EUR][1000 genomes]
rs34923020	0.87[EUR][1000 genomes]
rs41519044	0.89[EUR][1000 genomes]
rs55993167	0.88[EUR][1000 genomes]
rs56031313	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56238699	0.86[EUR][1000 genomes]
rs57146145	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58708412	0.87[EUR][1000 genomes]
rs59197925	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59253277	0.88[EUR][1000 genomes]
rs59702468	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60074235	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60376365	0.86[EUR][1000 genomes]
rs61831462	0.90[EUR][1000 genomes]
rs61831464	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61831480	0.88[EUR][1000 genomes]
rs61831504	0.87[EUR][1000 genomes]
rs61831519	0.82[EUR][1000 genomes]
rs6656530	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6668606	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6668607	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6692602	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72727759	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7534755	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7538168	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7547022	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7554903	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs900775	0.86[EUR][1000 genomes]
rs9286857	0.90[EUR][1000 genomes]
rs936723	0.86[EUR][1000 genomes]
rs992760	0.86[EUR][1000 genomes]
rs994970	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv947341	chr1:185651878-185664812	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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