The 2.0 version of rSNPBase

Variant report

Variant rs56001939
Chromosome Location chr2:54363878-54363879
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54343400-54388600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr2:54348600-54365800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr2:54348600-54365800 Weak transcription Left Ventricle heart
4 chr2:54349200-54366000 Weak transcription Primary B cells from peripheral blood blood
5 chr2:54350000-54365800 Weak transcription Psoas Muscle Psoas
6 chr2:54350400-54365800 Weak transcription Primary T cells from cord blood blood
7 chr2:54350600-54382600 Weak transcription Aorta Aorta
8 chr2:54351200-54365800 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr2:54351200-54365800 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr2:54352200-54411400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr2:54352400-54366000 Weak transcription HepG2 liver
12 chr2:54355400-54365800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr2:54359800-54370800 Weak transcription Small Intestine intestine
14 chr2:54360200-54367600 Strong transcription Primary B cells from cord blood blood
15 chr2:54360600-54382400 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr2:54361200-54374200 Weak transcription HSMMtube muscle
17 chr2:54361400-54389800 Weak transcription Lung lung
18 chr2:54362000-54365800 Weak transcription Fetal Intestine Small intestine
19 chr2:54362000-54386800 Weak transcription Brain Cingulate Gyrus brain
20 chr2:54362000-54416400 Weak transcription Primary T cells fromperipheralblood blood
21 chr2:54362200-54391400 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr2:54362200-54411200 Weak transcription Stomach Smooth Muscle stomach
23 chr2:54362400-54366600 Weak transcription Duodenum Mucosa Duodenum
24 chr2:54362400-54379400 Weak transcription Brain Anterior Caudate brain
25 chr2:54362400-54379400 Weak transcription Ovary ovary
26 chr2:54362400-54382400 Weak transcription Brain Hippocampus Middle brain
27 chr2:54362400-54382400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr2:54362400-54382600 Weak transcription Brain Inferior Temporal Lobe brain
29 chr2:54362400-54386800 Weak transcription Brain Substantia Nigra brain
30 chr2:54362600-54370400 Weak transcription Liver Liver
31 chr2:54362600-54382600 Weak transcription Right Ventricle heart
32 chr2:54362800-54365600 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr2:54362800-54366000 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr2:54362800-54387000 Weak transcription Brain Angular Gyrus brain
35 chr2:54363000-54377000 Weak transcription Fetal Lung lung
36 chr2:54363200-54375800 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr2:54363400-54365800 Weak transcription Adipose Nuclei Adipose
38 chr2:54363600-54365800 Weak transcription Fetal Stomach stomach
39 chr2:54363600-54366000 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr2:54363800-54377200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr2:54363800-54377200 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015