Variant report

Variant	rs56017479
Chromosome Location	chr18:30385090-30385091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12104007	1.00[AMR][1000 genomes]
rs16963999	1.00[AMR][1000 genomes]
rs16964005	1.00[AMR][1000 genomes]
rs16964017	1.00[AMR][1000 genomes]
rs16964035	1.00[AMR][1000 genomes]
rs16964036	1.00[AMR][1000 genomes]
rs16964062	1.00[AMR][1000 genomes]
rs16964082	1.00[AMR][1000 genomes]
rs16964115	1.00[AMR][1000 genomes]
rs16964116	1.00[AMR][1000 genomes]
rs16964117	1.00[AMR][1000 genomes]
rs28458243	1.00[AMR][1000 genomes]
rs28496433	1.00[AMR][1000 genomes]
rs28771668	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742357	1.00[AMR][1000 genomes]
rs61164044	1.00[AMR][1000 genomes]
rs9783891	1.00[AMR][1000 genomes]
rs9783904	1.00[AMR][1000 genomes]
rs9944992	1.00[AMR][1000 genomes]
rs9945125	1.00[AMR][1000 genomes]
rs9947074	1.00[AMR][1000 genomes]
rs9949048	1.00[AMR][1000 genomes]
rs9949112	1.00[AMR][1000 genomes]
rs9949158	1.00[AMR][1000 genomes]
rs9951977	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9953097	1.00[AMR][1000 genomes]
rs9956243	1.00[AMR][1000 genomes]
rs9956679	1.00[AMR][1000 genomes]
rs9958205	1.00[AMR][1000 genomes]
rs9963068	1.00[AMR][1000 genomes]
rs9965451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30380600-30385200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:30383400-30385200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:30384400-30389000	Enhancers	HepG2	liver
4	chr18:30385000-30387800	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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