Variant report

Variant	rs56025626
Chromosome Location	chr7:129462379-129462380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129303349..129305568-chr7:129461167..129463400,2	K562	blood:
2	chr7:129454177..129456052-chr7:129461153..129463544,2	K562	blood:
3	chr7:129415990..129422927-chr7:129459994..129470946,26	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs12530557	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12531622	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12531936	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12532612	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12532959	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12533033	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12533290	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12533464	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12533528	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12533953	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534043	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12534061	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12534134	1.00[AFR][1000 genomes]
rs12534320	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12535347	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12535722	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12535728	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12535857	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12536424	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12536978	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12537150	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12537336	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12537576	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12537604	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12537660	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12537782	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12538787	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12539145	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12539653	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12539800	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12540479	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12540517	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12540541	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12690	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1464970	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1464971	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1464972	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1471874	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1471877	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17559301	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1965567	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1965568	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2631601	0.93[EUR][1000 genomes]
rs2693729	0.87[ASN][1000 genomes]
rs2727457	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34463221	1.00[AFR][1000 genomes]
rs34629832	1.00[AFR][1000 genomes]
rs34930431	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35189138	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55675451	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55732825	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55735840	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55748031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55767113	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55769831	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55772531	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55798026	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55809128	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55955026	1.00[AFR][1000 genomes]
rs55995041	1.00[AFR][1000 genomes]
rs56022754	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56034137	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56080853	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56085705	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56094908	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56117230	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56153730	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56167610	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56176516	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56191413	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56321762	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56332361	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56333543	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56376893	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56381627	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56408895	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs718925	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs718926	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7639	0.83[AMR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129445200-129464600	Weak transcription	Right Atrium	heart
2	chr7:129445600-129464200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:129445600-129464600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:129456800-129464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:129457000-129464400	Weak transcription	HMEC	breast
6	chr7:129457200-129464200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:129457400-129464800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:129457600-129464600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:129457600-129464600	Weak transcription	Fetal Brain Female	brain
10	chr7:129457800-129464600	Weak transcription	HSMM	muscle
11	chr7:129458000-129464400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:129458000-129464600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:129458200-129464200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:129458400-129464200	Weak transcription	Hela-S3	cervix
15	chr7:129459000-129464600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:129459400-129464600	Weak transcription	Pancreas	Pancrea
17	chr7:129460000-129462400	Enhancers	Fetal Muscle Trunk	muscle
18	chr7:129460000-129464600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:129460400-129464600	Weak transcription	Fetal Brain Male	brain
20	chr7:129460400-129464600	Weak transcription	Fetal Stomach	stomach
21	chr7:129460600-129464600	Weak transcription	Right Ventricle	heart
22	chr7:129460800-129464600	Weak transcription	NH-A	brain
23	chr7:129461000-129462400	Enhancers	Fetal Heart	heart
24	chr7:129461000-129464400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:129461000-129464600	Weak transcription	Ovary	ovary
26	chr7:129461000-129464600	Weak transcription	NHDF-Ad	bronchial
27	chr7:129461000-129464800	Weak transcription	Brain Substantia Nigra	brain
28	chr7:129461200-129464600	Weak transcription	NHEK	skin
29	chr7:129461400-129464400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:129461600-129464400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr7:129461800-129464600	Weak transcription	Aorta	Aorta
32	chr7:129462000-129464400	Weak transcription	K562	blood
33	chr7:129462000-129464600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:129462200-129464200	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:129462200-129464600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:129462200-129464600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:129462200-129464600	Weak transcription	Brain Angular Gyrus	brain
38	chr7:129462200-129464600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:129462200-129464600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:129462200-129465200	Weak transcription	Stomach Mucosa	stomach
41	chr7:129462200-129465200	Weak transcription	HSMMtube	muscle

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