Variant report

Variant	rs56332361
Chromosome Location	chr7:129466848-129466849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129465763..129467512-chr7:129467735..129470263,2	K562	blood:
2	chr7:129301627..129303933-chr7:129464656..129467241,2	K562	blood:
3	chr7:129413756..129415970-chr7:129465026..129467265,2	MCF-7	breast:
4	chr7:129466079..129468992-chr7:129649373..129652142,2	MCF-7	breast:
5	chr7:129464687..129467079-chr7:129598257..129600358,2	MCF-7	breast:
6	chr7:129465218..129466979-chr7:129467217..129470017,2	MCF-7	breast:
7	chr7:129249743..129252439-chr7:129465240..129468029,3	K562	blood:
8	chr7:129465775..129467341-chr7:129472813..129475306,2	MCF-7	breast:
9	chr7:129302884..129306085-chr7:129464127..129467247,3	MCF-7	breast:
10	chr7:129463253..129467439-chr7:129470010..129474375,4	K562	blood:
11	chr7:129285246..129287176-chr7:129465957..129468026,2	MCF-7	breast:
12	chr7:129380203..129383393-chr7:129464866..129467037,3	MCF-7	breast:
13	chr7:129413450..129422592-chr7:129463248..129466944,22	MCF-7	breast:
14	chr7:129465559..129467721-chr7:129591278..129593666,2	MCF-7	breast:
15	chr7:129465730..129467252-chr7:129505158..129507081,2	MCF-7	breast:
16	chr7:129415990..129422927-chr7:129459994..129470946,26	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000199158	Chromatin interaction
ENSG00000273329	Chromatin interaction
ENSG00000244036	Chromatin interaction
ENSG00000186591	Chromatin interaction
ENSG00000106459	Chromatin interaction
ENSG00000207691	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs12530557	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12531622	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12531936	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532612	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532959	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533290	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533464	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12533528	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12533953	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12534043	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534061	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534320	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535347	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12535722	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535857	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12536424	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536978	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537150	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12537336	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537604	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12537660	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537782	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12538787	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539145	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539653	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12539800	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540479	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12540517	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540541	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12690	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464970	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1464971	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1464972	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1471874	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471877	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17559301	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965567	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1965568	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2631601	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2727457	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34930431	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35189138	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55675451	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732825	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55735840	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55748031	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55767113	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55769831	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55772531	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55798026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55809128	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56022754	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56025626	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56034137	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56080853	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085705	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56094908	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56117230	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56153730	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56167610	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56176516	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56191413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56321762	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333543	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56376893	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381627	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56408895	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs718925	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718926	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129465600-129469600	Weak transcription	Lung	lung
2	chr7:129466000-129469000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:129466000-129469800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:129466000-129470000	Weak transcription	Gastric	stomach
5	chr7:129466000-129471200	Weak transcription	Primary T cells from cord blood	blood
6	chr7:129466000-129471600	Weak transcription	Thymus	Thymus
7	chr7:129466200-129467400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:129466200-129468400	Weak transcription	Brain Germinal Matrix	brain
9	chr7:129466200-129468800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:129466200-129468800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:129466200-129468800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:129466200-129469000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:129466200-129469000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:129466200-129469000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:129466200-129469000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:129466200-129469000	Weak transcription	Right Ventricle	heart
17	chr7:129466200-129469200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:129466200-129469200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:129466200-129469200	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:129466200-129469400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:129466200-129469400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:129466200-129469400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr7:129466200-129469400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr7:129466200-129469400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr7:129466200-129469400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:129466200-129469400	Weak transcription	Brain Substantia Nigra	brain
27	chr7:129466200-129469400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:129466200-129469400	Weak transcription	Right Atrium	heart
29	chr7:129466200-129469400	Weak transcription	NH-A	brain
30	chr7:129466200-129469600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:129466200-129469600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:129466200-129469600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:129466200-129469600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr7:129466200-129469600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr7:129466200-129469600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr7:129466200-129469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:129466200-129469600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:129466200-129469600	Weak transcription	Brain Angular Gyrus	brain
39	chr7:129466200-129469600	Weak transcription	Fetal Brain Male	brain
40	chr7:129466200-129469600	Weak transcription	Left Ventricle	heart
41	chr7:129466200-129469600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:129466200-129469600	Weak transcription	Spleen	Spleen
43	chr7:129466200-129469600	Weak transcription	NHLF	lung
44	chr7:129466200-129469800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:129466200-129469800	Weak transcription	Aorta	Aorta
46	chr7:129466200-129469800	Weak transcription	Colonic Mucosa	Colon
47	chr7:129466200-129469800	Weak transcription	Fetal Intestine Large	intestine
48	chr7:129466200-129469800	Weak transcription	Fetal Kidney	kidney
49	chr7:129466200-129469800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr7:129466200-129469800	Weak transcription	Small Intestine	intestine

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