Variant report

Variant	rs7639
Chromosome Location	chr7:129473431-129473432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129465775..129467341-chr7:129472813..129475306,2	MCF-7	breast:
2	chr7:129472642..129475029-chr7:129512256..129514078,2	MCF-7	breast:
3	chr7:129463253..129467439-chr7:129470010..129474375,4	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12531622	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12531936	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12532959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12533033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12533290	0.81[ASN][1000 genomes]
rs12533528	1.00[JPT][hapmap]
rs12533953	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12534043	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs12534061	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12534320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12535722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12535728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12536424	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12536978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12537150	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12537336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12537576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12537660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12538787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12539145	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12539800	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12540479	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12540517	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12540541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1464971	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1464972	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1471874	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1471877	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17559301	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2631601	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2727457	0.81[ASN][1000 genomes]
rs55675451	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55748031	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55769831	0.81[ASN][1000 genomes]
rs55772531	0.81[ASN][1000 genomes]
rs55798026	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55809128	0.81[EUR][1000 genomes]
rs56022754	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56025626	0.83[AMR][1000 genomes]
rs56080853	0.81[ASN][1000 genomes]
rs56085705	0.81[ASN][1000 genomes]
rs56094908	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56117230	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56153730	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56167610	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56176516	0.81[ASN][1000 genomes]
rs56191413	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56321762	0.81[ASN][1000 genomes]
rs56332361	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56376893	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56381627	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56408895	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs718925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs718926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129466200-129475200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:129466200-129483800	Weak transcription	Dnd41	blood
3	chr7:129466400-129483400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:129470000-129480400	Weak transcription	Fetal Brain Male	brain
5	chr7:129470400-129473600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:129470400-129473600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:129470400-129473600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:129470400-129473800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:129470400-129473800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:129470400-129474200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr7:129470400-129474200	Weak transcription	Small Intestine	intestine
12	chr7:129470400-129475000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:129470400-129480200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:129470400-129480400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:129470400-129480600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:129470400-129480800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:129470400-129480800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr7:129470400-129483600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:129470600-129473600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr7:129470600-129473600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:129470600-129473800	Weak transcription	Fetal Brain Female	brain
22	chr7:129470600-129473800	Weak transcription	HepG2	liver
23	chr7:129470600-129474800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:129470600-129475200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr7:129470600-129480400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:129470600-129480600	Weak transcription	Brain Angular Gyrus	brain
27	chr7:129470800-129475000	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:129470800-129479000	Strong transcription	Fetal Intestine Small	intestine
29	chr7:129470800-129480200	Weak transcription	Brain Germinal Matrix	brain
30	chr7:129471000-129473600	Weak transcription	Fetal Lung	lung
31	chr7:129471000-129474200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:129471200-129479200	Strong transcription	Fetal Stomach	stomach
33	chr7:129471200-129479800	Strong transcription	Primary T cells from cord blood	blood
34	chr7:129471400-129473600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:129471400-129475400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:129471600-129475000	Weak transcription	Brain Anterior Caudate	brain
37	chr7:129471600-129477200	Strong transcription	Thymus	Thymus
38	chr7:129471600-129479000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:129471600-129479200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr7:129471600-129479200	Strong transcription	Liver	Liver
41	chr7:129471600-129479400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr7:129471600-129479400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:129471600-129479400	Strong transcription	Fetal Thymus	thymus
44	chr7:129471600-129480600	Weak transcription	Brain Substantia Nigra	brain
45	chr7:129471800-129474800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:129471800-129478000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr7:129472000-129473800	Weak transcription	Placenta	Placenta
48	chr7:129472000-129474800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:129472000-129475200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:129472000-129475200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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