Variant report

Variant	rs56031152
Chromosome Location	chr4:6973832-6973833
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6965177..6967591-chr4:6972240..6974882,2	MCF-7	breast:
2	chr4:6918088..6920742-chr4:6973003..6977658,4	MCF-7	breast:
3	chr4:6966970..6969558-chr4:6972075..6974539,2	K562	blood:
4	chr4:6972334..6975230-chr4:6986850..6989508,3	MCF-7	breast:
5	chr4:6968058..6971311-chr4:6972075..6975359,5	K562	blood:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1048009	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28384174	1.00[ASN][1000 genomes]
rs28729690	1.00[ASN][1000 genomes]
rs41410847	1.00[ASN][1000 genomes]
rs55633489	1.00[EUR][1000 genomes]
rs55659111	0.82[EUR][1000 genomes]
rs55672215	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55740475	1.00[ASN][1000 genomes]
rs55833486	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55913461	0.82[EUR][1000 genomes]
rs55942328	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56074877	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56081162	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56094305	1.00[ASN][1000 genomes]
rs56097119	0.87[EUR][1000 genomes]
rs56178503	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56300156	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56320732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56350643	0.82[EUR][1000 genomes]
rs56400338	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56903115	1.00[ASN][1000 genomes]
rs57454756	1.00[ASN][1000 genomes]
rs59683609	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59742225	1.00[ASN][1000 genomes]
rs59809420	1.00[ASN][1000 genomes]
rs60048916	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66519732	0.82[EUR][1000 genomes]
rs66573146	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66611116	1.00[ASN][1000 genomes]
rs66645969	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66712119	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66734745	1.00[ASN][1000 genomes]
rs66808450	1.00[ASN][1000 genomes]
rs66819208	1.00[ASN][1000 genomes]
rs66905212	1.00[ASN][1000 genomes]
rs66978412	0.91[AFR][1000 genomes]
rs67067921	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67245546	1.00[ASN][1000 genomes]
rs67252699	1.00[ASN][1000 genomes]
rs67315413	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67321746	1.00[ASN][1000 genomes]
rs67405518	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67702333	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67750430	1.00[ASN][1000 genomes]
rs67922134	1.00[ASN][1000 genomes]
rs67998004	1.00[ASN][1000 genomes]
rs68111914	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812391	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6812771	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs68169399	1.00[ASN][1000 genomes]
rs6838042	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838250	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841389	0.82[EUR][1000 genomes]
rs6851488	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855531	1.00[ASN][1000 genomes]
rs73088528	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73088564	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73199995	1.00[ASN][1000 genomes]
rs73202120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202122	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668802	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675281	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686168	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686186	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942188	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6955800-6976000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:6956000-6976000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:6957600-6976000	Weak transcription	Fetal Lung	lung
4	chr4:6957800-6976000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:6958400-6975800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:6964200-6976000	Weak transcription	Brain Germinal Matrix	brain
7	chr4:6965000-6976000	Weak transcription	A549	lung
8	chr4:6965200-6976000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:6965200-6976000	Weak transcription	Stomach Mucosa	stomach
10	chr4:6965200-6976200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:6965400-6974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:6965400-6976000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:6965400-6976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:6965400-6976000	Weak transcription	NHLF	lung
15	chr4:6965400-6976200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:6965400-6987800	Weak transcription	Small Intestine	intestine
17	chr4:6966200-6976000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:6967000-6976000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:6967600-6974400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:6967800-6975000	Weak transcription	HSMMtube	muscle
21	chr4:6967800-6976000	Weak transcription	Fetal Kidney	kidney
22	chr4:6968000-6987600	Weak transcription	HSMM	muscle
23	chr4:6968200-6976000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:6968800-6975000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:6968800-6975400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr4:6969000-6974000	Genic enhancers	Primary B cells from peripheral blood	blood
27	chr4:6969000-6974000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr4:6969000-6974800	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr4:6969000-6974800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:6969000-6975400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr4:6969000-6975400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr4:6969400-6974200	Strong transcription	Fetal Stomach	stomach
33	chr4:6969400-6974800	Strong transcription	Thymus	Thymus
34	chr4:6969600-6976000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:6969800-6985200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr4:6969800-6986000	Weak transcription	Left Ventricle	heart
37	chr4:6970600-6974200	Weak transcription	Psoas Muscle	Psoas
38	chr4:6970600-6976000	Weak transcription	Aorta	Aorta
39	chr4:6970600-6976800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr4:6970800-6974400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr4:6970800-6976000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr4:6970800-6976000	Weak transcription	Adipose Nuclei	Adipose
43	chr4:6970800-6976000	Weak transcription	Pancreas	Pancrea
44	chr4:6970800-6976200	Weak transcription	Fetal Brain Female	brain
45	chr4:6970800-6985800	Weak transcription	Esophagus	oesophagus
46	chr4:6970800-6987800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr4:6971000-6976000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:6971200-6975200	Genic enhancers	Fetal Intestine Small	intestine
49	chr4:6971400-6974600	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr4:6971600-6986400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links