Variant report

Variant	rs6812391
Chromosome Location	chr4:6963893-6963894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:6962320..6964054-chr4:6967764..6970067,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10000433	0.91[EUR][1000 genomes]
rs1048009	1.00[ASN][1000 genomes]
rs28384174	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729690	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41410847	1.00[ASN][1000 genomes]
rs55659111	0.92[EUR][1000 genomes]
rs55672215	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55740475	1.00[ASN][1000 genomes]
rs55833486	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55913461	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56031152	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56081162	1.00[ASN][1000 genomes]
rs56094305	1.00[ASN][1000 genomes]
rs56178503	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56268690	0.87[EUR][1000 genomes]
rs56320732	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56350643	0.92[EUR][1000 genomes]
rs56400338	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56903115	1.00[ASN][1000 genomes]
rs57454756	1.00[ASN][1000 genomes]
rs59683609	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59742225	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59809420	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60048916	1.00[ASN][1000 genomes]
rs66519732	0.92[EUR][1000 genomes]
rs66573146	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66611116	1.00[ASN][1000 genomes]
rs66645969	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66712119	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66734745	1.00[ASN][1000 genomes]
rs66808450	1.00[ASN][1000 genomes]
rs66819208	1.00[ASN][1000 genomes]
rs66905212	1.00[ASN][1000 genomes]
rs67067921	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67245546	1.00[ASN][1000 genomes]
rs67252699	1.00[ASN][1000 genomes]
rs67315413	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67321746	1.00[ASN][1000 genomes]
rs67405518	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67702333	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67750430	1.00[ASN][1000 genomes]
rs67922134	1.00[ASN][1000 genomes]
rs67998004	1.00[ASN][1000 genomes]
rs68111914	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6812771	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68169399	1.00[ASN][1000 genomes]
rs6836225	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6838042	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838250	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841389	0.92[EUR][1000 genomes]
rs6851488	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6855531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088528	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088564	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73199995	1.00[ASN][1000 genomes]
rs73202120	1.00[ASN][1000 genomes]
rs73202122	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668802	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675281	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686168	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686186	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942188	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992596	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6928000-6969600	Weak transcription	Aorta	Aorta
2	chr4:6945000-6970200	Weak transcription	Hela-S3	cervix
3	chr4:6945800-6965800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:6946600-6969000	Weak transcription	Dnd41	blood
5	chr4:6954000-6964000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:6954400-6965800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:6955800-6976000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:6956000-6964600	Weak transcription	Right Atrium	heart
9	chr4:6956000-6967000	Weak transcription	Psoas Muscle	Psoas
10	chr4:6956000-6976000	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:6956200-6964000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:6956200-6964400	Weak transcription	Adipose Nuclei	Adipose
13	chr4:6956200-6964400	Weak transcription	Colonic Mucosa	Colon
14	chr4:6956200-6964600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:6956200-6964600	Weak transcription	NHLF	lung
16	chr4:6956200-6965000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:6956400-6969200	Weak transcription	K562	blood
18	chr4:6957600-6970400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:6957600-6973800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:6957600-6976000	Weak transcription	Fetal Lung	lung
21	chr4:6957800-6976000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:6958400-6964400	Weak transcription	Right Ventricle	heart
23	chr4:6958400-6975800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:6958800-6967400	Weak transcription	Thymus	Thymus
25	chr4:6958800-6969400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:6959000-6964600	Weak transcription	A549	lung
27	chr4:6959200-6968800	Weak transcription	Primary T cells from cord blood	blood
28	chr4:6959400-6964600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:6959400-6967200	Weak transcription	Ovary	ovary
30	chr4:6959600-6964400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:6960000-6964400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:6961400-6965200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr4:6961600-6964000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr4:6961600-6964600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:6962000-6964600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:6962000-6965400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:6962200-6965400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr4:6962200-6965400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:6962200-6965400	Enhancers	Pancreas	Pancrea
40	chr4:6962200-6965600	Enhancers	Gastric	stomach
41	chr4:6962200-6969600	Weak transcription	Fetal Brain Female	brain
42	chr4:6962400-6964400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr4:6962400-6966200	Enhancers	Fetal Muscle Trunk	muscle
44	chr4:6962400-6967800	Enhancers	Fetal Muscle Leg	muscle
45	chr4:6962400-6968800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:6962600-6964000	Genic enhancers	Primary T cells fromperipheralblood	blood
47	chr4:6962600-6964800	Strong transcription	Fetal Stomach	stomach
48	chr4:6962600-6965400	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr4:6962600-6965400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr4:6962600-6968200	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links