Variant report
| Variant | rs56037864 |
|---|---|
| Chromosome Location | chr12:49016796-49016797 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SP1 | chr12:49016767-49017023 | GM12878 | blood: | n/a | n/a |
| 2 | SP1 | chr12:49016727-49017129 | K562 | blood: | n/a | n/a |
| 3 | NFYB | chr12:49016687-49017193 | K562 | blood: | n/a | chr12:49016976-49016991 chr12:49017043-49017058 |
| 4 | NFYB | chr12:49016763-49017197 | GM12878 | blood: | n/a | chr12:49016976-49016991 chr12:49017043-49017058 |
| 5 | NFYB | chr12:49016765-49017277 | Hela-S3 | cervix: | n/a | chr12:49016976-49016991 chr12:49017257-49017270 chr12:49017043-49017058 |
| 6 | SP1 | chr12:49016744-49017091 | GM12878 | blood: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:49002889..49004650-chr12:49015713..49017290,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR11M1P | TF binding region |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs3902956 | 0.85[AFR][1000 genomes] |
| rs55823822 | 0.84[AFR][1000 genomes] |
| rs56015238 | 0.85[AFR][1000 genomes] |
| rs56306303 | 0.85[AFR][1000 genomes] |
| rs56942518 | 0.85[AFR][1000 genomes] |
| rs58685133 | 0.85[AFR][1000 genomes] |
| rs61522435 | 0.85[AFR][1000 genomes] |
| rs74088109 | 0.85[AFR][1000 genomes] |
| rs74088111 | 0.85[AFR][1000 genomes] |
| rs74088113 | 0.85[AFR][1000 genomes] |
| rs74088132 | 0.85[AFR][1000 genomes] |
| rs74088154 | 0.85[AFR][1000 genomes] |
| rs74088160 | 0.85[AFR][1000 genomes] |
| rs74088162 | 0.85[AFR][1000 genomes] |
| rs74089307 | 1.00[AFR][1000 genomes] |
| rs74089309 | 0.85[AFR][1000 genomes] |
| rs74089329 | 0.85[AFR][1000 genomes] |
| rs74089330 | 0.85[AFR][1000 genomes] |
| rs74089332 | 0.85[AFR][1000 genomes] |
| rs74089333 | 0.85[AFR][1000 genomes] |
| rs74089334 | 0.85[AFR][1000 genomes] |
| rs74089339 | 0.85[AFR][1000 genomes] |
| rs74089356 | 0.85[AFR][1000 genomes] |
| rs74089365 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3332169 | chr12:49005807-49150691 | Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
