Variant report

Variant	rs74089307
Chromosome Location	chr12:49021953-49021954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs3902956	0.85[AFR][1000 genomes]
rs55823822	0.84[AFR][1000 genomes]
rs56015238	0.85[AFR][1000 genomes]
rs56037864	1.00[AFR][1000 genomes]
rs56306303	0.85[AFR][1000 genomes]
rs56942518	0.85[AFR][1000 genomes]
rs58685133	0.85[AFR][1000 genomes]
rs61522435	0.85[AFR][1000 genomes]
rs74088109	0.85[AFR][1000 genomes]
rs74088111	0.85[AFR][1000 genomes]
rs74088113	0.85[AFR][1000 genomes]
rs74088132	0.85[AFR][1000 genomes]
rs74088154	0.85[AFR][1000 genomes]
rs74088160	0.85[AFR][1000 genomes]
rs74088162	0.85[AFR][1000 genomes]
rs74089309	0.85[AFR][1000 genomes]
rs74089329	0.85[AFR][1000 genomes]
rs74089330	0.85[AFR][1000 genomes]
rs74089332	0.85[AFR][1000 genomes]
rs74089333	0.85[AFR][1000 genomes]
rs74089334	0.85[AFR][1000 genomes]
rs74089339	0.85[AFR][1000 genomes]
rs74089356	0.85[AFR][1000 genomes]
rs74089365	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332169	chr12:49005807-49150691	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49021600-49022200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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