Variant report
| Variant | rs56081722 |
|---|---|
| Chromosome Location | chr4:166482853-166482854 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10213568 | 1.00[EUR][1000 genomes] |
| rs10222790 | 1.00[EUR][1000 genomes] |
| rs28373383 | 1.00[EUR][1000 genomes] |
| rs28540812 | 1.00[EUR][1000 genomes] |
| rs28547097 | 1.00[EUR][1000 genomes] |
| rs56050257 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56207699 | 1.00[EUR][1000 genomes] |
| rs57198322 | 1.00[EUR][1000 genomes] |
| rs57395378 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57508190 | 1.00[EUR][1000 genomes] |
| rs60786866 | 1.00[EUR][1000 genomes] |
| rs73860770 | 1.00[EUR][1000 genomes] |
| rs73860771 | 1.00[EUR][1000 genomes] |
| rs73860772 | 1.00[EUR][1000 genomes] |
| rs73860783 | 1.00[EUR][1000 genomes] |
| rs73860785 | 1.00[EUR][1000 genomes] |
| rs73860786 | 1.00[EUR][1000 genomes] |
| rs73860789 | 1.00[EUR][1000 genomes] |
| rs73860791 | 1.00[EUR][1000 genomes] |
| rs73860793 | 1.00[EUR][1000 genomes] |
| rs73860794 | 1.00[EUR][1000 genomes] |
| rs73860795 | 1.00[EUR][1000 genomes] |
| rs73860796 | 1.00[EUR][1000 genomes] |
| rs73860797 | 1.00[EUR][1000 genomes] |
| rs73861021 | 1.00[EUR][1000 genomes] |
| rs73861075 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73863706 | 1.00[EUR][1000 genomes] |
| rs73863707 | 1.00[EUR][1000 genomes] |
| rs73863709 | 1.00[EUR][1000 genomes] |
| rs73863713 | 1.00[EUR][1000 genomes] |
| rs7673723 | 1.00[EUR][1000 genomes] |
| rs7680390 | 1.00[EUR][1000 genomes] |
| rs7699952 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv596052 | chr4:166454826-166488615 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:166477200-166483000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:166482600-166484200 | Weak transcription | Osteobl | bone |
