Variant report

Variant	rs28540812
Chromosome Location	chr4:166315176-166315177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166314486..166316368-chr4:166318044..166320457,2	K562	blood:
2	chr4:166299654..166301660-chr4:166314118..166315958,2	MCF-7	breast:
3	chr4:166309664..166311443-chr4:166315170..166317373,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

rs_ID	r²[population]
rs10018737	1.00[AMR][1000 genomes]
rs10222790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1370688	1.00[EUR][1000 genomes]
rs17046199	1.00[EUR][1000 genomes]
rs28373383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28435142	1.00[AMR][1000 genomes]
rs28547097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626606	1.00[AMR][1000 genomes]
rs56050257	1.00[EUR][1000 genomes]
rs56081722	1.00[EUR][1000 genomes]
rs56207699	1.00[EUR][1000 genomes]
rs57198322	1.00[EUR][1000 genomes]
rs57395378	1.00[EUR][1000 genomes]
rs57508190	1.00[EUR][1000 genomes]
rs60786866	1.00[EUR][1000 genomes]
rs73860770	1.00[EUR][1000 genomes]
rs73860771	1.00[EUR][1000 genomes]
rs73860772	1.00[EUR][1000 genomes]
rs73860783	1.00[EUR][1000 genomes]
rs73860785	1.00[EUR][1000 genomes]
rs73860786	1.00[EUR][1000 genomes]
rs73860789	1.00[EUR][1000 genomes]
rs73860791	1.00[EUR][1000 genomes]
rs73860793	1.00[EUR][1000 genomes]
rs73860794	1.00[EUR][1000 genomes]
rs73860795	1.00[EUR][1000 genomes]
rs73860796	1.00[EUR][1000 genomes]
rs73860797	1.00[EUR][1000 genomes]
rs73861021	1.00[EUR][1000 genomes]
rs73861075	1.00[EUR][1000 genomes]
rs73862311	1.00[EUR][1000 genomes]
rs73863706	1.00[EUR][1000 genomes]
rs73863707	1.00[EUR][1000 genomes]
rs73863709	1.00[EUR][1000 genomes]
rs73863713	1.00[EUR][1000 genomes]
rs7680390	1.00[EUR][1000 genomes]
rs7698358	1.00[EUR][1000 genomes]
rs7698407	1.00[EUR][1000 genomes]
rs7699952	1.00[EUR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305200-166319400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
5	chr4:166307200-166322200	Weak transcription	HepG2	liver
6	chr4:166311400-166319600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:166312200-166318800	Weak transcription	Fetal Brain Male	brain
9	chr4:166313200-166316200	Weak transcription	Fetal Brain Female	brain
10	chr4:166314200-166315400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr4:166314600-166315400	Enhancers	Brain Substantia Nigra	brain
12	chr4:166314600-166315400	Enhancers	Fetal Intestine Large	intestine
13	chr4:166314600-166315400	Enhancers	Fetal Lung	lung
14	chr4:166314800-166315200	Enhancers	Brain Cingulate Gyrus	brain
15	chr4:166314800-166315400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:166314800-166315600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:166314800-166315600	Enhancers	NH-A	brain
18	chr4:166314800-166315800	Enhancers	Ovary	ovary
19	chr4:166315000-166315400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:166315000-166315600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:166315000-166316000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:166315000-166316800	Weak transcription	Brain Anterior Caudate	brain
23	chr4:166315000-166325200	Weak transcription	Aorta	Aorta

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