Variant report

Variant	rs57198322
Chromosome Location	chr4:166325066-166325067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166298755..166301718-chr4:166324143..166325651,2	MCF-7	breast:
2	chr4:166324892..166326532-chr4:166339338..166341206,2	K562	blood:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

rs_ID	r²[population]
rs10222790	1.00[EUR][1000 genomes]
rs1370688	1.00[EUR][1000 genomes]
rs17046199	1.00[EUR][1000 genomes]
rs28373383	1.00[EUR][1000 genomes]
rs28540812	1.00[EUR][1000 genomes]
rs28547097	1.00[EUR][1000 genomes]
rs56050257	1.00[EUR][1000 genomes]
rs56081722	1.00[EUR][1000 genomes]
rs56207699	1.00[EUR][1000 genomes]
rs57395378	1.00[EUR][1000 genomes]
rs57508190	1.00[EUR][1000 genomes]
rs60786866	1.00[EUR][1000 genomes]
rs73860770	1.00[EUR][1000 genomes]
rs73860771	1.00[EUR][1000 genomes]
rs73860772	1.00[EUR][1000 genomes]
rs73860783	1.00[EUR][1000 genomes]
rs73860785	1.00[EUR][1000 genomes]
rs73860786	1.00[EUR][1000 genomes]
rs73860789	1.00[EUR][1000 genomes]
rs73860791	1.00[EUR][1000 genomes]
rs73860793	1.00[EUR][1000 genomes]
rs73860794	1.00[EUR][1000 genomes]
rs73860795	1.00[EUR][1000 genomes]
rs73860796	1.00[EUR][1000 genomes]
rs73860797	1.00[EUR][1000 genomes]
rs73861021	1.00[EUR][1000 genomes]
rs73861075	1.00[EUR][1000 genomes]
rs73862311	1.00[EUR][1000 genomes]
rs73863706	1.00[EUR][1000 genomes]
rs73863707	1.00[EUR][1000 genomes]
rs73863709	1.00[EUR][1000 genomes]
rs73863713	1.00[EUR][1000 genomes]
rs7680390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7699952	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:166315000-166325200	Weak transcription	Aorta	Aorta
5	chr4:166315800-166328000	Weak transcription	Ovary	ovary
6	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
12	chr4:166320200-166325200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:166320200-166325600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:166322800-166327000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:166323000-166325600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:166323200-166326000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:166323400-166325800	Enhancers	Fetal Brain Male	brain
19	chr4:166323400-166326200	Strong transcription	HepG2	liver
20	chr4:166323600-166325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:166323600-166330000	Weak transcription	Brain Anterior Caudate	brain
22	chr4:166323800-166325200	Enhancers	Fetal Brain Female	brain
23	chr4:166323800-166325400	Weak transcription	Brain Germinal Matrix	brain
24	chr4:166323800-166325600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:166324400-166326800	Weak transcription	Fetal Intestine Small	intestine
26	chr4:166324800-166326200	Strong transcription	Fetal Stomach	stomach

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