Variant report

Variant	rs56125105
Chromosome Location	chr9:7442878-7442879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs57012602	1.00[AMR][1000 genomes]
rs59355933	1.00[AMR][1000 genomes]
rs60801117	1.00[AMR][1000 genomes]
rs7018629	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7028707	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7028855	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7028993	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7032178	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043197	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043470	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7045625	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7049036	1.00[AMR][1000 genomes]
rs7049194	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398049	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398050	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398052	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398062	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398063	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398066	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398068	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398072	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398074	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398075	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398084	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401942	1.00[AMR][1000 genomes]
rs73413095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413099	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415135	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73640232	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73640233	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73640247	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73640248	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34566	chr9:7291742-7781370	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv818681	chr9:7292836-7781365	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv8411	chr9:7420218-7450456	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv831502	chr9:7428505-7599941	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv10941	chr9:7429023-7449898	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv1029032	chr9:7431547-7764888	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv892198	chr9:7438953-7466024	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7440400-7443000	Weak transcription	HMEC	breast
2	chr9:7440400-7452400	Weak transcription	HSMMtube	muscle
3	chr9:7440600-7446800	Weak transcription	Psoas Muscle	Psoas
4	chr9:7442400-7449800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:7442600-7443800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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