Variant report

Variant	rs59355933
Chromosome Location	chr9:7402859-7402860
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs56125105	1.00[AMR][1000 genomes]
rs57012602	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60801117	1.00[AMR][1000 genomes]
rs7018629	1.00[AMR][1000 genomes]
rs7028707	1.00[AMR][1000 genomes]
rs7028855	1.00[AMR][1000 genomes]
rs7028993	1.00[AMR][1000 genomes]
rs7032178	1.00[AMR][1000 genomes]
rs7043197	1.00[AMR][1000 genomes]
rs7043470	1.00[AMR][1000 genomes]
rs7045625	1.00[AMR][1000 genomes]
rs7049036	1.00[AMR][1000 genomes]
rs7049194	1.00[AMR][1000 genomes]
rs73398049	1.00[AMR][1000 genomes]
rs73398050	1.00[AMR][1000 genomes]
rs73398052	1.00[AMR][1000 genomes]
rs73398062	1.00[AMR][1000 genomes]
rs73398063	1.00[AMR][1000 genomes]
rs73398066	1.00[AMR][1000 genomes]
rs73398068	1.00[AMR][1000 genomes]
rs73398072	1.00[AMR][1000 genomes]
rs73398074	1.00[AMR][1000 genomes]
rs73398075	1.00[AMR][1000 genomes]
rs73398084	1.00[AMR][1000 genomes]
rs73401915	1.00[AMR][1000 genomes]
rs73401942	1.00[AMR][1000 genomes]
rs73413095	1.00[AMR][1000 genomes]
rs73413099	1.00[AMR][1000 genomes]
rs73415135	1.00[AMR][1000 genomes]
rs73640232	1.00[AMR][1000 genomes]
rs73640233	1.00[AMR][1000 genomes]
rs73640247	1.00[AMR][1000 genomes]
rs73640248	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032465	chr9:7182123-7409755	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv539972	chr9:7182123-7409755	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv34566	chr9:7291742-7781370	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv818681	chr9:7292836-7781365	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1019226	chr9:7299548-7415463	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv539975	chr9:7299548-7415463	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv428534	chr9:7312939-7403231	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv613262	chr9:7336443-7417689	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1034097	chr9:7345375-7405366	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
16	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7400000-7404000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:7400400-7403200	Enhancers	Fetal Brain Male	brain
3	chr9:7400400-7403400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:7400600-7403200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:7401400-7403600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:7401600-7403200	Enhancers	Fetal Heart	heart
7	chr9:7401600-7405600	Enhancers	Fetal Muscle Leg	muscle
8	chr9:7402000-7403000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:7402000-7403400	Enhancers	Adipose Nuclei	Adipose
10	chr9:7402000-7403400	Enhancers	Brain Hippocampus Middle	brain
11	chr9:7402200-7403000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr9:7402200-7403000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:7402200-7403000	Enhancers	Brain Cingulate Gyrus	brain
14	chr9:7402200-7403200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:7402200-7403200	Enhancers	HSMM	muscle
16	chr9:7402200-7403400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:7402400-7403000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:7402400-7403000	Enhancers	HMEC	breast
19	chr9:7402400-7403200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr9:7402400-7403400	Enhancers	Psoas Muscle	Psoas
21	chr9:7402600-7403000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:7402600-7403000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr9:7402600-7403200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr9:7402600-7404200	Enhancers	HSMMtube	muscle
25	chr9:7402800-7403000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:7402800-7403000	Enhancers	GM12878-XiMat	blood
27	chr9:7402800-7403200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:7402800-7403800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:7402800-7404800	Enhancers	Fetal Thymus	thymus
30	chr9:7402800-7407200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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