Variant report

Variant	rs56128589
Chromosome Location	chr6:11170105-11170106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3734406	1.00[AMR][1000 genomes]
rs58174898	1.00[AMR][1000 genomes]
rs73721655	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723906	1.00[AMR][1000 genomes]
rs73723908	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723919	1.00[AMR][1000 genomes]
rs9468538	1.00[AMR][1000 genomes]
rs9468564	1.00[AMR][1000 genomes]
rs9468689	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11145000-11172800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11155400-11172400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:11162000-11170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:11162000-11173000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:11162200-11172600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:11162400-11185400	Weak transcription	Esophagus	oesophagus
7	chr6:11162600-11172600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:11165600-11171400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:11165800-11172200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11167600-11173000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:11168600-11172600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:11169000-11172600	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:11169000-11172600	Weak transcription	Brain Substantia Nigra	brain
14	chr6:11169000-11172600	Weak transcription	Fetal Heart	heart
15	chr6:11169000-11173000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:11169200-11172600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:11169400-11170600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:11169600-11173000	Weak transcription	Right Atrium	heart
19	chr6:11169800-11172600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:11169800-11174600	Weak transcription	Left Ventricle	heart

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