Variant report

Variant	rs73721660
Chromosome Location	chr6:11165610-11165611
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3734406	1.00[AMR][1000 genomes]
rs56128589	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58174898	1.00[AMR][1000 genomes]
rs73721655	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723906	1.00[AMR][1000 genomes]
rs73723908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723919	1.00[AMR][1000 genomes]
rs9468538	1.00[AMR][1000 genomes]
rs9468564	1.00[AMR][1000 genomes]
rs9468689	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11145000-11172800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11155400-11172400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:11162000-11170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:11162000-11173000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:11162200-11167000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:11162200-11172600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:11162400-11185400	Weak transcription	Esophagus	oesophagus
8	chr6:11162600-11172600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:11164800-11165800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11164800-11165800	Enhancers	Fetal Intestine Large	intestine
11	chr6:11165200-11165800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:11165200-11165800	Enhancers	Fetal Intestine Small	intestine
13	chr6:11165200-11168400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:11165400-11165800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:11165400-11169000	Weak transcription	Left Ventricle	heart
16	chr6:11165600-11166000	Enhancers	HepG2	liver
17	chr6:11165600-11168400	Weak transcription	Adipose Nuclei	Adipose
18	chr6:11165600-11171400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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