Variant report

Variant	rs58174898
Chromosome Location	chr6:11237520-11237521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11235150..11238104-chr6:11239000..11242242,3	K562	blood:
2	chr6:11234125..11238203-chr6:11239752..11242885,4	MCF-7	breast:
3	chr6:11235150..11238104-chr6:11238478..11241359,3	K562	blood:
4	chr6:11233234..11236036-chr6:11236901..11238586,2	K562	blood:
5	chr6:11233234..11235237-chr6:11235574..11238401,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3734406	1.00[AMR][1000 genomes]
rs56128589	1.00[AMR][1000 genomes]
rs73721655	1.00[AMR][1000 genomes]
rs73721660	1.00[AMR][1000 genomes]
rs73721685	1.00[AMR][1000 genomes]
rs73723906	1.00[AMR][1000 genomes]
rs73723908	1.00[AMR][1000 genomes]
rs73723919	1.00[AMR][1000 genomes]
rs9468538	1.00[AMR][1000 genomes]
rs9468564	1.00[AMR][1000 genomes]
rs9468689	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11233600-11241800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11233800-11238400	Weak transcription	Brain Germinal Matrix	brain
3	chr6:11233800-11238600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:11233800-11241600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:11234000-11241800	Weak transcription	NHLF	lung
6	chr6:11234000-11242200	Weak transcription	Brain Anterior Caudate	brain
7	chr6:11234000-11242200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:11234200-11241800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:11234400-11238600	Weak transcription	Brain Angular Gyrus	brain
10	chr6:11234400-11241600	Weak transcription	Aorta	Aorta
11	chr6:11234400-11241800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:11234400-11241800	Weak transcription	Right Ventricle	heart
13	chr6:11234400-11249600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:11234600-11237800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:11234600-11248400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:11234800-11238000	Enhancers	HepG2	liver
17	chr6:11234800-11241600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:11234800-11242200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:11234800-11251400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:11235000-11257200	Weak transcription	Dnd41	blood
21	chr6:11235600-11237600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:11235600-11237600	Enhancers	NHEK	skin
23	chr6:11235800-11237600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:11235800-11237600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:11235800-11237800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:11235800-11237800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:11235800-11237800	Enhancers	Fetal Brain Female	brain
28	chr6:11235800-11238800	Enhancers	Fetal Brain Male	brain
29	chr6:11236000-11237600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:11236000-11237600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:11236000-11237600	Enhancers	Lung	lung
32	chr6:11236200-11237600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr6:11236200-11237600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr6:11236200-11237600	Enhancers	GM12878-XiMat	blood
35	chr6:11236200-11237600	Enhancers	HUVEC	blood vessel
36	chr6:11236200-11237800	Enhancers	Primary T cells from cord blood	blood
37	chr6:11236200-11237800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr6:11236200-11237800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:11236400-11237600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:11236400-11237600	Enhancers	Primary B cells from peripheral blood	blood
41	chr6:11236400-11237600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr6:11236400-11237600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:11236400-11237600	Enhancers	Fetal Intestine Small	intestine
44	chr6:11236400-11237600	Enhancers	Fetal Muscle Leg	muscle
45	chr6:11236400-11237600	Enhancers	Spleen	Spleen
46	chr6:11236400-11237600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr6:11236400-11237800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr6:11236400-11238000	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr6:11236600-11237600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:11236600-11237800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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