Variant report

Variant	rs73723919
Chromosome Location	chr6:11204056-11204057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11201732..11205267-chr6:11223600..11226865,3	MCF-7	breast:
2	chr6:11201485..11204415-chr6:11205595..11207344,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3734406	1.00[AMR][1000 genomes]
rs56128589	1.00[AMR][1000 genomes]
rs58174898	1.00[AMR][1000 genomes]
rs73721655	1.00[AMR][1000 genomes]
rs73721660	1.00[AMR][1000 genomes]
rs73721685	1.00[AMR][1000 genomes]
rs73723906	1.00[AMR][1000 genomes]
rs73723908	1.00[AMR][1000 genomes]
rs9468538	1.00[AMR][1000 genomes]
rs9468564	1.00[AMR][1000 genomes]
rs9468689	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11192800-11207000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:11192800-11207200	Weak transcription	Liver	Liver
3	chr6:11195400-11207200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:11195600-11207400	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:11197000-11211000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:11197000-11211200	Genic enhancers	HepG2	liver
7	chr6:11197800-11204600	Strong transcription	Primary B cells from cord blood	blood
8	chr6:11198200-11207000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:11198400-11206600	Genic enhancers	A549	lung
10	chr6:11198800-11205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:11199200-11205400	Weak transcription	Right Ventricle	heart
12	chr6:11199400-11212600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:11199600-11204200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:11199600-11204200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:11200200-11204200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:11200200-11204200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:11200200-11204600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:11200400-11204600	Genic enhancers	HUVEC	blood vessel
19	chr6:11200400-11205600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr6:11200800-11204200	Genic enhancers	NHLF	lung
21	chr6:11201000-11208600	Genic enhancers	Fetal Thymus	thymus
22	chr6:11201600-11206000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:11201600-11206000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:11201600-11206200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:11201600-11206600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:11201600-11207800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:11201600-11209600	Weak transcription	Fetal Brain Female	brain
28	chr6:11201600-11211000	Weak transcription	Gastric	stomach
29	chr6:11201800-11206600	Weak transcription	NHEK	skin
30	chr6:11201800-11213000	Weak transcription	Esophagus	oesophagus
31	chr6:11202000-11204200	Enhancers	Stomach Mucosa	stomach
32	chr6:11202000-11204400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:11202000-11204400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:11202200-11204200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:11202200-11204400	Enhancers	Fetal Heart	heart
36	chr6:11202200-11204600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:11202200-11204800	Enhancers	Fetal Lung	lung
38	chr6:11202400-11204400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:11202400-11205200	Weak transcription	Colonic Mucosa	Colon
40	chr6:11202400-11205400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:11202400-11206600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:11202600-11204200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr6:11202600-11204200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr6:11202600-11204200	Genic enhancers	NH-A	brain
45	chr6:11202600-11206000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:11202600-11206000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:11202600-11207000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:11202800-11204200	Enhancers	H1 Cell Line	embryonic stem cell
49	chr6:11202800-11204600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr6:11202800-11206000	Weak transcription	Dnd41	blood

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